Oryzias latipes (Japanese medaka): 101175453
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Entry
101175453 CDS
T02443
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ola03041
]
101175453 (ddx1)
03016 Transfer RNA biogenesis [BR:
ola03016
]
101175453 (ddx1)
Enzymes [BR:
ola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101175453 (ddx1)
Spliceosome [BR:
ola03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101175453 (ddx1)
Transfer RNA biogenesis [BR:
ola03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
101175453 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Ribul_P_3_epim
Motif
Other DBs
NCBI-GeneID:
101175453
NCBI-ProteinID:
XP_011490110
LinkDB
All DBs
Position
24:14763078..14769034
Genome browser
AA seq
765 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKMGRASIKTGGAIFNKWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCSDQGLCRVGWSTTQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLEKNQISYSKNGNDLGLAFEIPQNLKNQAFFVSCVLKNAELKF
NFGGEDFKHPPQNGFVALDKAPDGHTVKSSHTGTAKVSQVKASSNSAKALIIEPSKELAE
QTFNNVKQLKKYVDNPKLRELLIIGGVAAKEQLAVLEQGVDIVVGTPGRLDDLISTGKLS
LSQVRFLVLDECDGLLSAGYTDFINRVHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDRQWERLGKAHIRTDEVHVKDNTRPGAN
TPEMWSEAIKLLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDNKGHQF
SCVCLHGDRKPNERKHNLECFKRKEVRLLICTDVAARGIDISGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAMSLVAMEKEKVWYHVCPNRGRGCYNTRLKEDGGCTIWYNEKEVNK
DGLLQNIIEISLFLANILPLSQLLSEIEEHLKCTITHCGTDIKVPVDEFDGKVTYGQRKA
LGGGNYKGHVDALAPTVQELANLEREAQTSFLHLGYLPNQLFRAF
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgaaatgggggtgatgcctgaaatcgcgcaggcggtggaggagatg
gactggctgctgcctacagatattcaagcggagtccatcccacttattctcggtggagga
gacgtacttatggcagcagaaactggcagtggcaaaaccggagccttcagtattccagtg
atccagatcgtatacgaaacactgaaggatcagcaggagggcaagatgggccgagcttct
atcaagactggaggagctattttcaacaagtggcagatgaatccatacgaccgcagtcca
gcctttgctattggccccgatggactgtgctgccaaagcagggagtttaaagagtggcat
ggctgtcgctccaccaaaggcgtcacaaaaggaaaatattattatgaagtcacctgcagc
gaccaaggtttatgccgagtgggttggtccaccactcaggcagctctggatttaggaacg
gataagtacggttttggttttggtggtactgggaagaaatccaacaacaagcagtttgac
agctatggagaggagtttaccatgcatgacactattggatgctacctcgatctggagaaa
aaccaaatttcttactctaaaaatggcaatgacttgggtttggcttttgaaatccctcaa
aacctgaaaaatcaggcgttctttgtttcctgcgttctcaagaatgcagaactgaagttt
aattttggaggagaagactttaaacatccgccccaaaatgggtttgttgctctggacaag
gcgccagacggtcacacggtcaaatcctctcacacaggaactgctaaagtgagtcaggtg
aaagcctcgtcaaactcagccaaagctctgatcattgagccatccaaagaactggcagag
caaaccttcaacaatgtcaaacagttaaaaaaatacgtggacaaccccaaactcagggag
cttctgattattggtggtgtggctgccaaggagcagctggcagttctagagcagggggtt
gacattgtggtgggaacacctgggcggctggatgatctcatttccaccgggaagctcagt
ctctcgcaagtccgcttcctcgtcctggatgagtgtgacggcctcctctcagcaggctac
acagatttcataaacagggttcataaccagattccccaggtgacctccgatggcaagaga
ttacaggtcatcgtgtgctcggctacgctgcactcgtttgatgtgaagaagctttcggag
cgcatcatgcattttcccacgtgggtggacctgaaaggggaagactcagtcccagagacg
gtgcaccacgtggtggttcccgtcaaccctaaaaccgaccggcagtgggagcgtctcgga
aaagcccacattcggacagatgaagtccacgtcaaagacaacaccaggccaggagccaac
actccagaaatgtggtccgaagccatcaagctcctgaagggcgagtacacagtgagggcc
attaaagagcacaaaatggaccaggccataatcttctgtcgcacaaagatcgactgcgac
aacatggagcagtacttcatccagcaaggaggaggcccagataataaaggtcaccaattt
tcctgcgtttgtctccatggcgaccgaaagcctaatgagaggaagcacaacttggagtgc
tttaagagaaaagaagtgaggctgctgatctgcactgacgttgctgccagggggattgat
atttccggagtgccttacgtgatcaatgtgacccttccagacgagaagcagaattatgtc
catcggatcggccgagttggaagagccgagagaatgggactggccatgtctttggttgcc
atggaaaaagaaaaggtgtggtaccatgtttgcccgaaccgaggccgaggttgctacaac
acccgactgaaggaagatggaggatgcaccatctggtacaatgaaaaagaggtgaataaa
gacgggctcttgcagaatataatcgagatttcattattccttgcaaatattcttcccctc
tcccagcttctgtcagaaattgaggagcatctgaagtgcacaatcacccactgtgggacg
gacataaaagtgccagtggacgagtttgatggcaaagtgacctacgggcagcgcaaagct
ttagggggtggaaactataagggtcacgtggatgccctggctccgacggtccaggagttg
gccaaccttgaaagagaagctcagacttccttccttcatcttggatacttgccaaaccag
ctcttcagagctttctaa
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