Oryzias latipes (Japanese medaka): 101175497
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Entry
101175497 CDS
T02443
Symbol
dhx36
Name
(RefSeq) ATP-dependent RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101175497 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101175497 (dhx36)
03012 Translation factors [BR:
ola03012
]
101175497 (dhx36)
Enzymes [BR:
ola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101175497 (dhx36)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101175497 (dhx36)
Translation factors [BR:
ola03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101175497 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
DPPIV_rep
ATPase
AAA_19
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
101175497
NCBI-ProteinID:
XP_004075666
UniProt:
A0A3B3HH74
LinkDB
All DBs
Position
13:12810119..12832531
Genome browser
AA seq
1050 aa
AA seq
DB search
MSSRFAGGGGRRGRRGGGRGHRDNSRERWDRGGSSSFDQEDQGGASGPRDRPPPHLKGRE
IGLWYARYGAVRRKQADRRSRAVVHMDEAREQHITRLLNSVQNDQLGPKRDSRDARASTS
YSRQTDARDSSHCYFDGDLPEEEKIKAEVKSEDEEEEDFTKCSISRETVKDEPPDNWDGD
EEKEEKEKKIKQEKDLEYLFQEVVRDQSLDDYLKSDFRNKTFEPKYKEMLKFREKLPSYS
KKEDLVELINSNRVLVVSGETGCGKTTQVTQFILDDYINRGVGSLCRVVCTQPRRISAIS
VAERVAAERGESVGNGNSCGYQIRLQSRLPRRQGSILYCTTGIILQWLRSDPTLSSISHL
VLDEIHERNLQSDVLLIIVKDLLRMRDDLKVILMSATLNAEKFSKYFDNCPMIHIPGLTF
PVEEFLLEDVVEMIRYRPQNQDRRPAWKRGFWQGRQLRSEKEAKEAEYKESWPCYARTLQ
GRYSDSTIQTLEVLDSDDKIDLELILALICHIVRSEEEGAILVFLPGWDNISGLNDLLMA
QTMFRSDRFVIIPLHSLMPTVNQTQVFKRPPPGVRKIVIATNIAETSITIDDVVYVIDGG
KIKETNFDTNNNISTMTAEWVSLANAKQRKGRAGRVCPGKCYHLYNGLRASLLDAYQLPE
IMRTPLEELCLQIKILKLGSIGRFLEKALDRPTEEAVNLAIKNLRDLNALDHTENLTPLG
FHLARLPVEPHIGKLILFGALLGCLDPVLTIAASLSFKDPFFIPLGKEKMADMRRRTLSR
NSKSDHLTIVYAFQGWEDAKRRGGRYEREYCWDNFLSANTLQMIHNMKSQFAEHLKHTGF
VSSKDPKDPESNINSDNEKLIKAVIVAGLYPKVATIRPSHSKKRPGVKVYTQADGKVNIH
PKSVNAEEKEFNYTWLIYHLKMKTSSIFLYDCTEVSPFSLLFFGGDITIQKDEDQETIAV
DKWIVFRSPARIAHLVKSLKRELDSLLQEKISNPAPVDWQNRQSKDCAVITAIIDLITTQ
ERAAGSSGRTWASAPKGQHIYFNDADDDDD
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgagttctcggtttgcaggtggaggtggtagaaggggcagaagaggaggaggtcgcggg
cacagagacaacagcagagagaggtgggacagaggaggctcgagctcctttgaccaggag
gaccaaggaggagcaagtggaccaagagaccgtcctcctccgcatctgaaggggcgagag
attggtctgtggtacgcgcggtatggagcagtgaggaggaaacaagccgatcgaagatcg
agggctgtggtccacatggatgaggccagagagcagcacatcactaggctgctaaattct
gtacagaacgaccagctcggcccaaaaagagacagtagggatgcaagagcctccacctcg
tacagcaggcagacagatgcaagggatagtagtcattgttattttgatggggatctgcct
gaagaggagaagatcaaggctgaagttaaaagtgaggatgaagaggaggaagactttaca
aaatgttccatctctagggaaacggtaaaagacgagccaccggacaactgggatggagat
gaagaaaaggaagagaaggagaaaaaaataaaacaagaaaaagatttggagtacttgttt
caggaagtagtcagagaccaatcactggatgattacctgaaaagtgactttcggaataaa
acatttgaaccaaagtacaaagaaatgctgaaatttagagaaaaactgccgtcttacagc
aaaaaagaggatctggtggaactcataaactccaaccgggttctggtggtgagcggggag
accgggtgtgggaaaaccactcaggtgacccagttcatcctggatgactacatcaacagg
ggcgtgggctctttgtgtcgtgttgtgtgcacgcagcctcgccgcatcagcgccatctcg
gtagctgagcgtgtggctgctgagaggggagagagcgtggggaatgggaattcttgtggt
taccaaatccgcctgcagagccggttaccacggagacaaggttcaatcctgtactgtaca
acaggcatcattcttcagtggctgcgctcggatccgacactttctagcatcagtcatttg
gttttggatgagattcatgagaggaacctccagtcggacgtcttgctcatcatcgtcaag
gacttacttcgaatgcgagatgacctcaaagtcatcctcatgagtgccacgcttaacgcg
gaaaagttttcaaaatatttcgacaattgcccaatgatccacatccctggtctgacattc
ccagtggaagagttcctgctggaagatgttgtagagatgattaggtatcgtccccagaat
caggaccgtcgtccagcctggaagaggggcttttggcaaggccgccaactcagatctgag
aaggaggcaaaagaggccgaatacaaggagagctggccctgttatgcacgcacactgcag
ggaagatactctgacagcaccatccagaccttagaggttttggacagcgatgacaagatt
gatctggagctgatcttggcactgatctgtcatattgtgcgcagtgaggaggaaggagcc
atcttggttttcctacccggctgggacaacattagcggtcttaacgacctgctgatggct
cagaccatgtttagatctgatcggtttgttatcatccctctgcactccctcatgcccacg
gtgaatcaaacacaggttttcaaaaggcctccacctggagttcgaaagattgtaatcgct
actaacatagctgagacgagcatcaccatagatgacgttgtgtacgtgatcgacggcggg
aagattaaggaaaccaacttcgacaccaacaacaacatcagcacaatgacggctgagtgg
gttagtctagccaatgccaagcaaaggaaaggacgtgcaggcagagtgtgtccaggaaag
tgctatcacctgtacaatgggctcagggccagcctgctggatgcatatcagttacctgaa
attatgaggacgccattggaggagctctgcttgcagataaagatattaaagctcgggtct
ataggtcgattcctagagaaagccctggaccgccctactgaggaagctgtcaacctcgcc
atcaagaacctcagagatctgaatgccctggaccatacagagaatctgacaccattgggt
ttccacttggcccgtctcccggtggagcctcacattgggaagctgatcctgtttggtgct
ctgctgggatgcctggaccctgttctcaccatcgctgcttctctcagcttcaaagacccg
ttcttcatacccctgggtaaagaaaagatggccgacatgaggagaagaaccctgtccagg
aactctaaaagtgaccacctcaccattgtctatgcctttcagggctgggaagacgctaaa
cggcgtggtggcaggtatgagagggagtactgctgggacaacttcctgtcagccaacact
ctccagatgattcataacatgaagagccagtttgctgaacatctcaagcatacaggcttt
gtcagcagcaaagacccaaaagatcctgaatccaacattaactcggacaacgagaagcta
atcaaagcagtgatcgtagccgggctgtatccgaaggtggccaccattagaccgtctcac
agcaagaagaggccgggggtgaaggtttacacccaggctgacgggaaggtgaacatccac
cccaaatctgtcaacgctgaagagaaggagttcaactacacatggctcatttatcacctg
aagatgaaaacaagcagtatcttcctgtacgactgcacagaggtgtccccgttctcgctg
cttttctttgggggggacatcaccatccagaaagatgaggaccaggagaccatcgctgtg
gataagtggatcgtcttcaggtccccagctcgcatagctcaccttgtcaagagtttaaag
agagaacttgactcgctgctgcaggagaaaatcagcaatccagcccctgtggactggcag
aaccgtcagtccaaagactgcgctgtcatcaccgccatcatagacctcatcaccacccag
gagagggccgcgggcagcagtgggaggacgtgggcgtccgcccccaaaggacagcacatt
tacttcaatgatgctgatgacgacgatgattaa
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