KEGG   Oryzias latipes (Japanese medaka): 101175542
Entry
101175542         CDS       T02443                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    101175542 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ola03021]
    101175542 (taf5)
   03036 Chromosome and associated proteins [BR:ola03036]
    101175542 (taf5)
Transcription machinery [BR:ola03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     101175542 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     101175542 (taf5)
Chromosome and associated proteins [BR:ola03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     101175542 (taf5)
    STAGA complex
     101175542 (taf5)
    TFTC complex
     101175542 (taf5)
    SAGA complex
     101175542 (taf5)
    SLIK complex
     101175542 (taf5)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_IFT122_1st Beta-prop_WDR3_1st Beta-prop_THOC3 TFIID_NTD2 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_VPS8 NBCH_WD40 Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_SCAP Beta-prop_Aladin WDR90_beta-prop_4th DSE1_N Beta-prop_TEP1_C PAC11 Beta-prop_WDR41 CFAP251_N Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_SPT8 WD40_RFWD3 Beta-prop_WDR19_1st ASA1 Beta-prop_DCAF12 WD_LRWD1 Beta-prop_Nup120_160 Beta-prop_NOL10_N PEP5_VPS11_N LisH_PAC1 Tricorn_2nd DNAI3_WD eIF2A Beta-prop_WDR11_2nd CDK5RAP3 Beta-prop_ACSF4 LisH_TPL RAB3GAP2_N DUF7165 Beta-prop_ELP1_1st PROPPIN
Other DBs
NCBI-GeneID: 101175542
NCBI-ProteinID: XP_011477828
LinkDB
Position
1:29662764..29667960
AA seq 748 aa
MAAVQGGMVDEKEEVDIKTEPQSDGLMNTNATDGRQLSPSPSSSSSAGSTKSAAGAPEDQ
QTLLAVLQFLRKNKLTESVEILRREAGLPEDALDTKGADCSAPSSGGTAGGVDGLDAGSL
LSRVAVSSSAGTPAPTKAAVADDQPDVSVVLSAYSQQGDPALYKVYYSDLKKFIESVLDC
HRAELSQVFYPLFVHMYLELVYNNHESEAKAFFEKFSGDQECYYEDDLRVLSSLTKKEHM
RGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQ
IDAMSGSLAGEAKREANKAKVYYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSMG
SKSKKQDPNAPLQNRIPLPELKDSDKLDKIMYMKESTKRIRLGRENLPSICFYTFLNAYQ
GLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDEK
TASESKILYGHSGPVYGISFSPDRNYLLSCSEDGTVRLWSLLTFTCLVGYKGHNYPVWDT
QFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVVTGSSDRTI
RLWDVLTGNCVRIFTGHKGPIHTLAFSPNGKFLASGATDGRVLLWDIGHGLMVSELKGHT
DTVYALRFSRDGEILASGSMDNTVRLWDAAKAFDDLETDDFTAATGHIHLQDNSQELLLG
TYMSKSTPVVHLHFTRRNLLLAAGSYAA
NT seq 2247 nt   +upstreamnt  +downstreamnt
atggcggccgtgcagggtggaatggtcgacgagaaagaagaagtcgacataaaaaccgaa
ccgcagagcgacgggctcatgaacacaaatgcgaccgacgggcgacagctctctccgtcc
ccgagctccagcagctcggctgggagcaccaaaagtgcggctggggcgccggaggaccag
cagacgctgctggcggttctacagttcctgagaaagaacaagctgacggagtccgttgaa
attctgcggcgtgaggcgggactgcccgaggatgcgctggacacaaagggggcggactgc
agtgcgcccagctcgggcggcaccgctggcggcgtggacggcctggatgcgggctctctg
ctcagccgggtggccgtgtcttcctccgctggaactccggcgccgaccaaagcagcagtc
gcagacgatcagcccgacgtcagtgtggtgctgtcagcctacagccagcagggagacccg
gctctctacaaagtttactacagcgacctgaagaagttcatcgagtcggtgttggactgc
caccgggcagagctgtcgcaggtcttctacccgctctttgtccacatgtacctggagctg
gtgtacaacaatcatgagagtgaagccaaggccttctttgaaaagttcagcggggatcag
gagtgctactacgaagacgacctccgggttttatccagcctcaccaagaaagagcacatg
agaggcaacgagacgctgctggacttccgcaccagcaagttcgtcctgcgcatctcccgt
gactcctaccagctgctgaagaggcacctgcaggagcgccagaacaatcagatctggaac
atcatccaggagcacctgtacatcgacatcttcgacggcatgccccgcagcaagagccag
atagacgccatgtcaggcagcttagcaggagaggccaagcgggaggccaacaaagccaag
gtttattatgggctgctgaaagaaccagagattgaagtgcccctggatgatgaagatgaa
gaggcggagaacgaagagggcaagccgaagaagaagaagccaaagaaggacagcatgggt
tccaagagcaagaagcaagatcccaacgctccgttgcagaacaggatacctctgccagaa
ctgaaggactctgacaagctggacaaaatcatgtacatgaaggaatccacaaaaagaatc
cgtctgggacgggagaacctgccctccatctgcttctacaccttcctcaacgcgtaccag
ggtctgaccgcggtggacttcacggacgactccagcctgatagcaggaggctttgccgac
tccacggttcgggtgtggagtgtgacgccaaaaaagctgcgcaaggtcaagtctgcagca
gacttgaatttgattgacaaagagtcagacgatgttctagagaggatcatggatgagaag
acggccagcgagtcgaagattctgtacggacacagcggcccggtgtacggcatcagcttc
agcccagacagaaactacctgctgtcctgttctgaggacggcacggtccggctgtggagt
ctcctcaccttcacgtgtctagtgggctacaaaggccacaactacccagtgtgggacact
cagttttccccgtatgggtactactttgtctctgggggtcatgaccgggtggctcgactc
tgggcgacggatcactaccagcccctgcggatatttgccggtcacttggctgatgtcacc
tgcacccgtttccaccccaactccaactacgtggttacaggctcgtctgaccgcaccatc
cggctctgggatgtcctgacggggaactgtgtccggatcttcaccggtcacaagggtccc
atccacactctggctttctctcccaacgggaagttcttggcctcgggggcgactgacggc
agagttcttctgtgggacatcggtcatgggctgatggtttcagagctcaaaggccacacg
gatacggtctatgccctcaggttcagcagggatggagaaatcctggcctctggttcgatg
gacaacacggtccgcctttgggatgcagcgaaggcgttcgatgatttagagactgacgac
ttcacagctgccacaggacacatccacctgcaggacaactcccaggagcttctgctgggg
acatacatgagcaaatccacgcctgtggtccacctccacttcactcgcaggaacctgctt
ctggctgcaggatcttatgctgcatga

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