Oryzias latipes (Japanese medaka): 105354268
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Entry
105354268 CDS
T02443
Symbol
fanca
Name
(RefSeq) Fanconi anemia group A protein isoform X1
KO
K10888
fanconi anemia group A protein
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
105354268 (fanca)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ola03400
]
105354268 (fanca)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex
105354268 (fanca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fanconi_A_N
Fanconi_A
Tom5
RDM
Motif
Other DBs
NCBI-GeneID:
105354268
NCBI-ProteinID:
XP_011474753
LinkDB
All DBs
Position
6:27705837..27726974
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AA seq
1437 aa
AA seq
DB search
MSLSATCESVAQKRTLSSLLAGRVLKKPKLGDGRRLQVEAIQLLEQHQDLSSLFQEVVTP
DLCNTLGSQNDEQKPSLPKGICSPFAGSLLLNELKRQAAQIGVSVTVLSARMILERLVEI
TQETDEEKQEENSSRGMFTCHQRVQLCALFESGRELLSLGALCPKLLWQEYRRGQKLPKL
EVVYYLHSYNILSLKSIMKSDEGVGTWLLSQMKALSEWTPPDTEEETKKVQKKVLSTVVG
FLVGGGFEKIHDAAATDVKISLLCCSVMDDLLLWVLDIVDKSSAHQSVETGAKLWLEIFD
SSLCGVLATEEAVQRFFTHFLTQTLTYKPQLSVSDAISLQNEWTFAKASCCLTTLFRKLA
VVFSVGQLLGHLQRVLETHEVNWKHVLCFLSTLLVYEQSAQSSLKDLLSRLLNSAFHGYD
LENMITAFLLARQGALEGPAIFFSYSDWFKMSFGSGSGYHANSKKSLVFLLKFLSDLVPF
EPPQYLKVHILNPPYVPVKHRSLLMEYVSLAKTRLADLKESVEDMGLYEDVSGAAVQPEC
QAEQDVEKAVSLFRTTGRISATVMEASIFRRPYFLTRFLPALLKPRLLPVKQDDLMSFIE
ALKKADKIPAALYSSYLESCQKQRQQKKSVVCLDTKDDPLEVVRIQLQEFTELVTSGNHG
EMSAQLSRISHTLSIIFPGCPNEPTGNTVIILNTDGALLAELHSNAVNILLRNFCQCLLN
ASRSNSPNQQNQWASMFVRMLLGNTQLLSSLMNRLWDLFHNQGSLLNSAHVLGLAVFVVH
LQASMSHNPLVQLASTVRQEPIPFRNVLSSALVCSTLPNMLFCVRLCVAAVCYGICAGDS
LPEQQQQEFIPSSIFKKLLYLIPRLMPEARGTIAEVSDQEECGLWSSITDSNSTWSKAAC
CLWRHKAFQQLQLLPQYRLSFSEWLHSELRVQRSEDALSDTQRQEYQQWACMDFYLPLPE
EQGGCGGDMKNLCSHFLNAIMDQQPSSDSSPERPFVQPGTAETGSCLPDLLSRLQELIYE
MEVSCGHRLDLCDFLFELLSQRCPPTGTSASMSIGTELSLQQTLHTWNRVLPSLPAVLFI
RVKTEGERTTVEINKLIEHVNQHQRRVCAPAGLLPSHITAHFLKGLIYACVQCKYPAEEL
SKVWSHIGLHCPLMLVSTAHWWRRLSAFAFSLWRRLSDGASPPQQLQLLTDCQHWASSLV
NGQGLPMPSAPSILLAASLHRSWQSCEVKSLRVALNSLQHQKDVKYKQVLVFLLFFHVND
YLSALLDPEGKNVDQIRLFCTELVSASMNSADWLLLFTTDEQGIYHLVTRVTSDRVALLF
PWAFCSLLFQENAGLLQSATRCPGFLRTAILCYISALQLYLDGQTPKPAKQLLEPSHILS
LTKQFLLSLIPQTSPASVSSIQLRQLESRCADLDPELSAALSMHLDPHSLSPEIDFL
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgagtgcgacgtgtgagtctgttgctcagaaaaggacattgtcgagcctcctc
gctggtcgtgtgctgaagaagccaaagcttggagatggtcggaggttgcaggtggaagca
atccaactgttggagcaacatcaggaccttagcagcctgtttcaggaggtggtgactcca
gatttgtgcaacactttgggctctcaaaacgatgaacagaaaccgtctttgccgaaggga
atctgctctcccttcgctggatctttgctgttgaatgaactgaagcgtcaggccgcacaa
ataggcgtgtcggtcactgtgctttcagcgaggatgatactggaaagactggtggagatc
actcaagagaccgatgaagaaaagcaggaagaaaacagtagccgagggatgttcacgtgt
catcagagggtccagctgtgtgctctgtttgagtccggcagagaactgctgtcactggga
gccctttgccctaaactgctctggcaggagtacaggagaggtcagaaacttcccaaactg
gaggttgtgtactatttacattcatacaacatcctctccctgaagtccatcatgaaaagt
gatgaaggtgttggaacatggctgttgtctcaaatgaaagctctttctgaatggacacct
ccagacacagaggaagaaaccaaaaaagttcaaaagaaagttttatcaactgtggttggc
ttcttggtgggaggaggcttcgagaagatccacgacgccgcagcaacagacgttaagatc
tccctgctgtgctgctctgtgatggacgatctgctcctctgggttttggacattgtggac
aaaagttcagcacatcagtcagttgagacaggagccaagctttggcttgaaatatttgat
tcatccctttgtggggtcttagcgacagaagaggcggtccagcgtttttttactcatttc
cttacacagactctcacctacaaacctcaactatcagtgtcggatgccataagtctgcag
aatgaatggacttttgccaaagccagctgctgtctgactacacttttccgaaagctggcg
gtggttttcagtgtgggccagctcttgggtcacctgcagcgggttctggaaactcacgag
gtcaactggaaacatgtcctctgcttcctctccactctcttggtttatgagcagtctgcc
cagtccagcctcaaagacctgctgtccagacttctgaactctgcatttcacggctatgac
ctggagaacatgataactgccttcttgttggctcgacagggtgcgctggagggtcccgcc
atctttttttcctacagtgactggttcaagatgtctttcggcagtggcagtggctaccat
gcaaacagcaagaaatccctggtgttcctgttgaagttcctctctgacctggtgcccttt
gagcctccacagtacctcaaggttcacatcctgaaccctccttatgtgcctgtgaaacac
cgcagtcttctcatggagtacgtttctttggcaaagactcgacttgctgacctaaaggag
tctgtggaggacatgggtttatatgaagatgtttccggtgcagcagtgcagcccgaatgt
caggcggagcaggatgtggagaaagccgtgtctttgtttaggaccactggcaggatctct
gcgacagtcatggaggccagtatcttccggaggccgtatttcttgacccgattccttcct
gctttgttgaagcccagactgcttcccgtgaaacaagatgatctgatgagcttcattgaa
gctttaaagaaggcagataagatccctgcggcactgtattcctcttatctagagtcttgt
cagaaacagcgacagcagaaaaaaagtgttgtgtgtttggacaccaaagatgatcctctg
gaggttgtcaggattcagctgcaggagttcacagagctggttactagtggaaaccatgga
gagatgtcagcccagctgtcccggatctcccacactttgagcatcatctttcccggttgt
cccaatgaaccgactggaaacaccgtcatcatcctgaacactgatggcgctctgttggct
gagctgcactcgaacgctgtcaacatcctcctgagaaacttctgtcagtgtctgttaaac
gcttccagatcaaactctcccaaccaacaaaaccagtgggcgtctatgtttgttcgtatg
ctgcttgggaacacgcagcttctatccagtctcatgaacagactgtgggacctttttcat
aaccagggctcattgcttaattctgcacatgtactcggattggcagtgtttgtggttcac
cttcaggcctccatgtcccacaatcccctggttcagctggcttcaactgttcgacaagaa
ccgatcccgttcagaaatgttctcagctcggctcttgtgtgcagcacactccccaacatg
ctcttctgtgtcaggttgtgtgttgccgctgtgtgttatgggatctgcgccggagactca
ctgcctgaacagcaacaacaggagttcatccccagcagcatttttaagaagctcctgtac
ctcataccaagacttatgccggaggccagaggaactattgctgaggtttctgatcaggag
gagtgcggtctgtggagcagcatcacagacagcaacagcacctggagcaaggccgcctgc
tgcctgtggagacacaaagccttccaacagctccagctgctgccgcagtataggttgagt
ttctccgaatggctgcacagcgaactcagagttcaaaggagtgaagacgcgctgtctgac
acacagcgtcaggagtatcagcaatgggcttgtatggatttttatcttcctcttcctgag
gagcagggaggctgcggcggagacatgaagaacctctgctcgcactttctcaacgccatc
atggaccagcagccaagcagtgactccagccctgaaaggcctttcgttcagccaggaaca
gcagagacaggaagctgcctgccagacctcctgtccaggttacaggagctgatctacgag
atggaggtcagctgtggtcacagactcgatctgtgcgacttcctgtttgagctgctgtct
cagagatgcccgcccacagggacgtcggcctcgatgagcatcggcactgagctcagtctg
cagcaaacgctacacacatggaacagggttctcccgtctctcccagctgttcttttcatc
cgagtaaagacagaaggagaaagaacaactgtggaaataaacaagctaatagaacatgtc
aaccagcatcagaggagagtatgcgctccggccggcttgctgcccagccacataactgca
cacttcttgaagggcctaatatatgcttgtgtgcagtgtaaatatccagcagaagaattg
agcaaagtctggtctcacataggtcttcactgtcctctgatgctggtctctacagcgcac
tggtggcgacgtttgtctgcatttgcattttcactctggcggcgcctgagtgacggcgcg
tctccaccacagcagctgcagctcctcactgactgtcagcactgggccagcagcttagtg
aatggtcaggggctgccgatgccttcagctccatctattcttttggcggccagccttcat
cgttcttggcagagctgtgaagtaaaaagcctccgtgttgccctgaattccctgcaacac
cagaaagatgtcaaatataagcaggtgcttgtttttctgctcttcttccacgtcaacgac
tatctgtcagcacttttggatcctgagggaaagaatgtagaccaaatcagactcttctgc
actgagcttgtcagcgcgtcgatgaactctgccgactggctgctcctcttcacaacagac
gagcaaggcatttatcatttggtaaccagagtgacatccgacagggtagctctgttattc
ccctgggctttttgcagcttgctctttcaggaaaatgcaggtctgcttcagagcgccaca
cgatgtccagggttcctgcgtaccgccatcctctgctacatctccgctctgcagctctac
ctggatggacaaactccaaaacctgctaagcagctgctggagccttcccacattctgagc
ctcacaaagcagtttctcctaagtctgattcctcaaacgtctccagcttccgtgtcctcc
atccagctcagacagcttgagtcccgctgtgcagacctggacccagagttgtctgcagct
ctctccatgcacctggacccccacagcctcagccctgagatcgacttcctctga
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