Oryzias latipes (Japanese medaka): 110013551
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Entry
110013551 CDS
T02443
Name
(RefSeq) transcription factor SOX-4
KO
K23581
transcription factor SOX4 (SOX group C)
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ola03000
]
110013551
Transcription factors [BR:
ola03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
110013551
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
110013551
NCBI-ProteinID:
XP_020555578
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Position
11:27126856..27130208
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AA seq
360 aa
AA seq
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MVQHVSAHAHSPGGDSTDTGDMDLEMDSCPISGSPSSRERSDLAWCKTPTGHIKRPMNAF
MVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDTDKIPFIREAERLRLKHMADYPDY
KYRPRKKVKTGSGTNKQPEKNGERSAKISGKKSPAPKSASRTHKQGGSRGASGPESGDHH
SLFKSRSVSGARQIPEKLTGEPRRAHVFGGTGSLESDPPSVGVPASPTPSSSAESSDPLS
LYEEQSPRSSESSHTARLRYARAPSPTPSAAHSSSSVSSSSDEEFEDERFDLSRSPGFES
MSLGGTGLSDTEVDRDLDWSFRECGAGSHFDFSDYCTPEVSEMISGEWLESTISNLVFTY
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atggtgcagcacgtgagcgcgcacgctcactctcccggcggggactctacggacacggga
gacatggacctggagatggactcctgtccgatctctgggtcgccgtcctcccgggagcgc
agcgacttggcttggtgtaagactcccaccggccacatcaagcggcccatgaacgcgttc
atggtctggtcccagatcgagaggcggaagatcatggagcagtcaccggacatgcacaac
gcggagatctccaagcggctggggaagcgctggaagctgctcaaagacaccgacaaaatc
cccttcatccgcgaggctgagcgcctccgactcaaacatatggccgactacccagactac
aagtaccggccccgaaagaaggtcaagaccggaagtggaacaaacaagcaaccagagaag
aacggggagcgcagcgccaagatcagcggcaagaagagccccgcgcccaagagcgccagc
aggacgcacaaacaggggggcagtaggggcgcctctggaccggagtctggtgaccaccac
tcactcttcaaatccaggtcagtgtccggggcccggcagatccccgagaagctcacgggt
gagccgaggcgcgcccacgtgttcggtggcacgggtagtctggagagtgacccgccctcc
gtgggtgtcccggccagtcccacccccagcagctcggcggagtccagcgacccgctgagc
ctgtacgaggagcagagcccgcgctccagcgagtcctcacacaccgcgcggctccggtac
gcacgcgccccctccccaacgccatcagccgcgcactcttcctcatccgtgtcgtcctcg
tctgatgaagagtttgaagacgagcgatttgacttaagccgcagccccgggtttgagagc
atgtctctgggcggcacgggcctctccgacacggaggtggaccgggacttggactggagc
ttcagggagtgcggggcgggatctcactttgacttctccgactactgcacgcccgaagtc
agcgagatgatctcgggagagtggttggagtccacgatctccaacctggtgttcacctac
tga
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