KEGG   Oryzias latipes (Japanese medaka): 110017107
Entry
110017107         CDS       T02443                                 
Name
(RefSeq) transcription factor Sox-19a
  KO
K16796  transcription factor SOX2 (SOX group B)
Organism
ola  Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:ola00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ola03000]
    110017107
Transcription factors [BR:ola03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    110017107
SSDB
Motif
Pfam: HMG_box HMG_box_2 SOXp HMG_WDHD1 PDZ_assoc
Other DBs
NCBI-GeneID: 110017107
NCBI-ProteinID: XP_023821810
LinkDB
Position
18:complement(26493298..26496920)
AA seq 302 aa
MYSLMEHEMKPAGQPHPQHAAPGMTPVTGGMTLGGGTNPHPKTACAPGNDPMDKVKRPMN
AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSDAEKRPFIDEAKRLRAVHMKEYP
DYKYKPRRKTKPLLKKDAPGAKYPLSAGNLLAAAAQGQGASPRMESYGWGPAGGYSGMQG
DALGYSQPLHRYELSALQYPPAMTAAQTYMGGANSYSPMTYSSPQQPSPVTMSMMKAEQV
SHSPSAGTPTHHRGALQGDLRDMISMYIPATGGDASDAAAQQRGYAGVQQHYLSGTVPLT
HI
NT seq 909 nt   +upstreamnt  +downstreamnt
atgtacagcctgatggagcacgagatgaagccggccggccagcctcaccctcagcacgcg
gcgccggggatgacccccgtgaccggcggcatgactttgggcggcggcacaaaccctcac
ccgaaaacggcgtgcgcgcccggaaacgaccccatggataaggtgaagagacctatgaac
gccttcatggtctggtctcgggggcagcggagaaaaatggcccaggaaaaccccaagatg
cacaactctgagatcagcaagcggctgggcgcagagtggaaactcctcagcgacgcggag
aagcgtcccttcatcgacgaggccaagcggctgcgcgccgtgcacatgaaggagtacccg
gactacaagtacaagccgcgccgcaaaaccaagccgctgctgaagaaggacgcgccgggg
gccaagtacccgctgtccgccgggaacctgctggccgccgccgcgcagggtcagggcgcc
agcccgcgcatggagagctacggctggggccccgccggcggctacagcggcatgcagggc
gacgcgctgggctactcccagccgctgcaccggtacgagctgtccgccctgcagtacccg
ccggccatgacggccgcgcagacatacatgggcggggccaactcctacagtcccatgaca
tacagcagccctcagcagcccagcccggtcaccatgtccatgatgaaggcggagcaagtg
tctcactcaccctcagcggggacacccactcatcaccgaggagcactacagggcgacctg
agggacatgatcagcatgtacatccctgcgaccggaggggacgcctcggacgcggcggcg
cagcagcggggatatgccggtgtccagcagcactacctctccgggaccgtcccgctcacg
cacatctag

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