Oryzias latipes (Japanese medaka): 111946820
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Entry
111946820 CDS
T02443
Name
(RefSeq) structural maintenance of chromosomes protein 6-like isoform X1
KO
K22804
structural maintenance of chromosomes protein 6
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ola03400
]
111946820
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
111946820
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Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_29
TMF_TATA_bd
AAA_21
Motif
Other DBs
NCBI-GeneID:
111946820
NCBI-ProteinID:
XP_023807213
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Position
22:451315..475068
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AA seq
1112 aa
AA seq
DB search
MSKRKAAGSSDGAALKKSRLTAAITQNAPRSATARALPAPVSQSSGDIGLIESITLKNFM
CHRSLGPFQFGPNVNFIVGNNGSGKSAILTALIVGLGGKATVTNRGVSLKDFVKMGENTA
DITVKLRNKGADAYRKDVYGDCITVEHRVFSDGSRTCKLKNGSGQLVSNKKEELVSILDH
FNIQLDNPVSILSQEMSKQFLHSKNEADKYKFFMKATLLEQMKRDYIHIKHTETVTRQQI
ARQEESLKDLKLELLQKKERYENLSSFSQMKEELEKLNKKMAWCLVREQEQTIQRLKEEA
EKEENNHRPRDNLRLCQSKLLHAEKELQDVRSRAEHQREEQEALRKDSLRLKEQARLSSR
AHKEQELAYFRLLNRLRQSEQEQNLLQEKIGKGTTSHSRTSGGESPMQQHQKNLRDLQEQ
LEHLEARCLLLNEEMKKKQQALLKGKEERDTLRAEQRSVQVLFESKLKRRNQLLASRSNK
LKRFGDHIPDLLSSVAAASAAGRFLKKPIGPIGTAHGFWSLTRRLCQNCLVIDIGSCISL
KDPSLAVAVECCLRSFMKAFCCDNYKDEAVLQELMTRFYPKGNRPQIIVSPFTDRLYNVH
GRKVCHPEFRSVLDVVTASSPVILNCLIDMRGIESILIIKDKDKARRVMQQEAPPRNCRE
AFTAEGDQVFLNRYYTSDCSFPKYLSRDIEMEISLLEAELENQKAHLCRFQLQLSSVTKD
IDSMESGVNSTIMTLKKTALSVNRVKVAITELETDEEVDDIRLLEEAVQESRQRIAAERR
AVEEAKAKLEQLQMVAEGAESEFSSVRDTADQMLEDMEPLKEEQLRLEAECAKFERVHAV
LENKLKAHEDNVHAMKTEVCNREEELQEYVQKATAISPERQSGTCSAKSVDSEITCLKKK
IKVYESSHGDPEQLVRKYAESLALFRDKSSQVRDLRRFIDRLTAIMSDRQNRYKIMRRSL
SVRCKLYFNNFLIKMKCCGSMSFDHNNETLSISVRTPGRDRDGVSDLRLLSGGERSFSTV
CFMLSLWEITESPFRCLDEFDVYMDMHNRRICLDLLLELSERQHLRQFIFITPLNTSNLP
RSPLIRIHHLWDPERDKTGAEDEQLRLQTPRR
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagaggaaagctgcaggcagcagtgacggagcggctctgaagaagtccagactg
actgctgcgatcacccagaatgcaccacgttctgcaacagccagggcactgccggccccc
gtcagtcagtcctcgggggacatcggcctgatcgaaagcatcactctgaagaacttcatg
tgccaccgctctctgggtccgttccagtttgggcccaacgtaaactttattgttggaaac
aatggaagtggaaaaagcgccatcctgaccgctctgatcgtgggtctcggtggaaaagcc
accgtgacaaacagaggagtgtccctgaaggattttgtaaagatgggtgaaaataccgct
gatataacggtgaagctgaggaacaaaggagctgacgcctacaggaaggatgtttacggc
gattgcatcacagtggaacatcgcgtcttcagtgacggctcccgaacctgcaagctgaag
aacggatcagggcagcttgtttccaacaagaaggaggaactggtgtccatcttggaccac
ttcaacatccagctggacaaccccgtctccatcctcagccaggaaatgagcaaacagttc
ctgcactccaagaatgaagctgacaaatataagttcttcatgaaagccactctgctggag
cagatgaagagggattacatccacatcaagcacacggagactgtcacgcggcagcagatc
gcgaggcaggaagagagtctgaaggacttgaagctggaactcctgcagaagaaggagcgc
tatgaaaacctgtcgtccttcagtcagatgaaggaggagctggaaaagctgaacaagaaa
atggcctggtgtttggtccgagagcaggagcagaccattcagcggctgaaggaggaagct
gagaaggaggagaacaaccacagacctcgggacaacctgcggctctgtcagagcaaactg
ctgcatgcagagaaggagctgcaggacgtcaggagcagagctgagcatcagagagaggag
caggaggctctgaggaaggacagcctgaggctgaaggagcaggccaggctgagcagcaga
gctcacaaggagcaggagcttgcttatttccgactactgaacagactccgacagtcggag
caggagcagaacctcctgcaggagaaaataggaaaaggaacaaccagccacagtcggacc
tctggaggagaaagcccaatgcagcagcaccagaagaacctccgggacctgcaggagcag
ctggaacatctggaggcccggtgtctgctgttgaacgaggagatgaagaagaagcagcag
gcgctcctcaaggggaaagaggagcgagacaccctcagagcggaacagaggagcgtccag
gttctgttcgagtccaagttgaagaggaggaaccagctcctcgccagtcgctccaacaag
ctgaagcggtttggagatcacattccagacttgctgagctcggtggccgccgccagcgct
gcaggacgcttcctcaagaaacccatcggacccatcggtactgcacacgggttctggtcc
ttgacccgccgcctctgtcagaactgtttagtgatagacataggctcctgcatcagcttg
aaggacccgtccctcgccgtggcggtggaatgttgcctgcgcagcttcatgaaggccttc
tgctgtgataactacaaagacgaggccgtcctccaggaactgatgacgcgcttttaccca
aaaggcaacaggcctcagatcatcgtcagccccttcaccgacaggctgtacaacgttcac
ggacggaaggtgtgtcatccggagttccggtccgtgctggacgtggtcacagccagcagt
ccggtcatcctcaactgcctgatcgacatgcgagggatcgagtccatcctcataatcaaa
gacaaggacaaggccaggagggtcatgcagcaggaagccccgcccagaaactgccgcgaa
gccttcactgccgaaggagaccaggtgttcctgaaccgctattacacctccgactgcagc
ttccccaaatacctcagccgggacatcgagatggagatcagcctgttggaggcggagctg
gagaaccagaaagctcacctgtgccggttccagctgcagctgagctcggtgaccaaggac
atcgacagcatggagagcggcgtgaacagcaccatcatgaccttgaagaagactgcgttg
tccgtaaatcgggtgaaagtggcgatcactgagctggagacggacgaggaggtggacgac
atccgcttgctggaggaggcggtccaggagagccggcagaggatcgcagcagagaggaga
gcggtggaggaggccaaggccaagctggagcagcttcagatggtggcagagggggcggag
tctgagttctcatctgtcagagacacagcggatcagatgttggaggacatggagccgctg
aaggaggagcagctgcggttagaggcggagtgcgccaagtttgagcgcgtccacgcagtt
ctggagaacaagctgaaggcccacgaggacaacgtccacgccatgaagacggaggtctgc
aacagggaggaggagctgcaggaatacgtgcagaaagccacggcgatcagcccggagcgg
cagagcgggacctgcagcgccaagagcgtcgactcggaaatcacctgcctgaagaagaaa
atcaaggtgtacgagagcagccacggcgaccccgagcagctggtcaggaaatacgccgag
tcgctcgctctcttcagagacaaaagcagccaagtgcgagatctgcggcgcttcatcgac
cgactcaccgccatcatgtccgaccggcagaacagatacaaaatcatgcggaggtccctg
tcggtgcgatgtaagctctacttcaacaacttcctgatcaagatgaagtgctgcggctcc
atgagcttcgaccacaacaacgagacgctttccatctcggtcaggacccccggccgggac
agggacggcgtgagcgacttgaggttgctgtccggcggcgagcgctccttctccaccgtc
tgcttcatgctgtctctgtgggaaatcacagagtcgcccttcagatgcctcgacgagttt
gacgtctacatggacatgcacaaccggaggatctgtctggatctgctcctggagctgtcg
gagcggcagcaccttcggcagttcatcttcatcactcctctgaacaccagcaacctcccc
aggagccccctcatcaggatccaccacctgtgggacccagaaagagacaaaactggcgcc
gaagacgagcagctccggctgcagacgccaagacgatga
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