Oryzias latipes (Japanese medaka): 111949076
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Entry
111949076 CDS
T02443
Symbol
acin1
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03013
Nucleocytoplasmic transport
ola03015
mRNA surveillance pathway
ola03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111949076 (acin1)
09122 Translation
03013 Nucleocytoplasmic transport
111949076 (acin1)
03015 mRNA surveillance pathway
111949076 (acin1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
111949076 (acin1)
03041 Spliceosome [BR:
ola03041
]
111949076 (acin1)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111949076 (acin1)
Spliceosome [BR:
ola03041
]
Complex C
Other components
EJC/TREX
111949076 (acin1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
111949076
NCBI-ProteinID:
XP_023821089
LinkDB
All DBs
Position
17:complement(17730119..17746528)
Genome browser
AA seq
1628 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLSKSGQKNALIKRLKGALMLENLQRTSTPH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAYETNEQQDHADVNNSTQCP
PPAQDITQGIAGQHMPPDPEFGSLNAGQGNANQEADVSSPPASGSVSMRVPAVEQRQDRG
FASGEAAGDSDDDDSEGGEEERNDDDWDSNARRRNFREQARVPAARERSGVSRQPQQQHI
PPLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPDVAPARHSPSTSSSGSSSSDSRSS
SPEPQRGAHAERKPGPLTLLARKMASEGAFSGPSWHGTAGEGDMQDNRSLEGLVSAITHT
ANTAGHISFPMIPGTHQSVSGAHSAHTEVPVSVLRATVVDEKDRQFQENEKALELERQEK
MKKLEQERALALEREKALEREKLERQQALEREEKEKALQRERELALERERQEREQALARE
REELERQKELERQRALEQERLQREREEKEKREREERERQLELEKARERERKQQEIEQALE
QARLKREREEAEKKEKERVERERALELERLEKEKIEREKALEKERMEKERIEREKALELQ
RIEREKALEQERLEQERKEKERVEREKALELERIEREKRENEEKERLERERALEQERIER
EEREKKEKEAALEQERLERERAEKERQEQLEKEKALEQERLEKERALELERQKKEKALEE
ERERALERERLENEEAMKKEKEEKAKLISTEKESETCLSPSKPKPGPGIGLTSLPDPSLL
STGTARNLPTEAGERGDVGAPVTTSEAQAAKTEVTVSPHKRFHFVRVSPSQPQSSSTPMV
IKRPRTFSDTPQPRGQPITASSSAKEQQLERQVSPLKQQDPQNLTNREVSTAAGQSEQKD
AAKPAAHQSQQEETKRLVSEEKRVDSAKASKQDEESKGSVSADTPEQKSTDAKKKKTRSS
SSNDSSSSESDSGSSSSRSSSSSSSSQDKSSSRGREEGKRERASSQHHMDTTEAQAEVLK
ETKNVSLCRNVNSIENNNNIDGETPNKHLSEATTRESRQTTENEEEEERGKQRQGKETAM
VDSQKLSETGEETPKTFSARKISLGNNKSSPGTSSAEAEQEAGGVAGRKRRWGSSTVVTA
KKPSISITTDSLKSLIPDIKPSLGQEAVVDLHPEEAALSGAEEEDRERSEQDLQIRRTVT
QVVHAESPENGENEAKRSRRQEVEEEDCRAEQDRIKTQEEQVEVSLPGTVEAQIPAHTSP
DVEMNTVTPSDTLIRRSISQQKTGVSITIDDPVRTAQQPSPPRGKVSNIVHICNLVRPFT
LGQLKELLSRTGTLVEDGFWIDKIKSHCYVTYSSVEEAVATRTALHGVKWPQSNPKVLSV
DFCQQDELDFHKSLGTAERPGDDQGPGPGRGRALGLPPLLPERDQWAEREREMERRERAR
AEREWDRDKIKEFGKHGEDKEGGSRRSRSRERRRKERGKSKEKKADKKADEPPAKLLDDL
FCKTKATPCIYWLPLTDEQYVQRQAARAERMKEREKLRKELEEEEEKKREEERKERMKAT
GATTGDQGEGEKDKDRDRERDRNRDRGRDRDRERENDKRRDSHRRPGASGASSSRRSRSR
SDPRDRRR
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccttgaagacgttacgctggacgggagaccgcttcagtccctccgagttgcg
gatttaaaagcagctctcgaggaaagagggctgtcgaaaagcgggcaaaagaatgctctc
attaaaagactcaaaggggctctcatgctcgagaatttgcagagaacgtctacacctcac
attggtctccagccaaactctcagattggtgaagaaatgagccagaacagttttattaaa
cagtatttggctaagcagcaggagcttctgaggcagcgtctggaaagagaggctcgggaa
gcatatgaaacaaacgaacaacaggaccacgcagacgttaacaacagtacacaatgccct
ccccctgcccaggatatcacacagggaatagcagggcaacacatgccacctgacccagag
tttgggtcactgaatgcaggacaaggaaacgctaatcaggaagctgacgtgtccagtcca
cctgcttctggctctgtatccatgcgggttcctgctgttgagcaaaggcaagatcgaggc
ttcgcgtccggtgaagctgcaggcgacagcgacgacgatgacagcgaaggtggagaagag
gaacgcaacgacgatgactgggacagtaacgctcgaaggagaaatttccgagaacaagcc
agagtccccgcagcaagggagaggtcaggggtatcccggcaaccacagcagcaacacatc
cctccccttttgtctcctcaactccgccaaccaacacctcctccctcccctcctccagag
ttatcatttcctttacctgataccccaaagcagagcccacccagtcccgatgtcgcccca
gccagacactcacccagtacctccagctccggttcctccagcagcgacagccgcagtagc
agtccagaaccgcagaggggtgcacacgctgagcgcaagcctggcccactgaccctgctg
gcacgcaaaatggcatcagagggggctttctctggaccaagttggcatggcacagcggga
gaaggcgatatgcaagacaacaggtctctagagggtctggtatctgccatcactcacaca
gcaaatacagcaggccatatatcatttcccatgattccaggaacccaccagagtgtctct
ggtgcgcattctgctcacaccgaagtgcctgtgagtgtcctaagagccacagtggtagac
gagaaggacagacagtttcaggaaaatgaaaaagcacttgagttggaacggcaggagaag
atgaagaagctcgagcaagaaagagcacttgctctcgagagggaaaaagctctggaaaga
gagaaattggagcgacagcaagccttagaaagggaagaaaaagagaaggctttacagcgg
gaaagagaacttgctctggaaagagaaaggcaggagagggagcaagcgttggctagggaa
agggaggagctagaaaggcagaaggagcttgaaagacaacgagctctggagcaagaacgc
ctgcagagagaaagagaggagaaggaaaagcgggagcgggaggaaagggagaggcagctg
gagttggagaaagccagggagcgggagagaaaacagcaagagattgaacaggctctggaa
caagcaagattgaagagagaaagagaagaggcagagaaaaaggagaaggaaagagtcgag
agggaaagagctttggagcttgaacggcttgaaaaggaaaaaattgagagggagaaagct
ttggagaaggagagaatggagaaggagagaattgagagagaaaaagctttagagctccag
agaatagaaagagaaaaagctctagagcaagaaagactggagcaagagaggaaggaaaaa
gaaagagttgaaagagagaaagcacttgagcttgagagaatagagagggaaaaacgagaa
aatgaagaaaaagagaggcttgaaagagagcgagctttagagcaggaaagaattgagagg
gaagaacgagagaaaaaggagaaggaggcagctctagaacaggagaggttggagagggaa
agggctgaaaaagaaaggcaagaacagttggagaaggagaaggctctagagcaggagaga
cttgagaaggaaagagctttggagctggaaagacagaaaaaggagaaagctttggaagaa
gaaagagaaagggctctggaacgggaaagactggagaatgaggaggccatgaagaaggaa
aaggaggagaaagcaaagcttattagcacagaaaaggagagtgagacctgcctttctcca
tccaaacccaaacctggtcccgggattggtctgacttccctgcccgatccttcactcctg
tctacaggaacagctagaaacctgccgacagaagcaggagagcgtggagatgttggtgct
ccggtgacgacgagtgaagctcaggcagcaaagactgaagtaaccgtgtccccgcataag
aggtttcactttgtacgggtctccccgagtcaaccccagtcctcatccactcctatggtt
atcaagcggcctcgcacgttctcagacacccctcagcccagaggtcaacccatcaccgca
tcaagcagtgccaaagagcaacagcttgaacggcaagtgtccccccttaagcagcaagac
ccacagaatctgacaaatcgagaagtttcaactgcagcaggtcagtctgagcagaaagac
gcagctaaacctgcggcgcaccagagtcaacaagaggagaccaaaaggcttgtgtctgaa
gaaaaacgggttgattcagcaaaggcttcaaaacaagacgaggaaagcaagggttctgta
agcgcagacactccagaacagaagagtactgatgcaaagaagaaaaaaacaagatcgtca
tcatctaatgactcctcctcttcagagtcagactctggatcttcatcatctcgctcatcg
agctcgtcctcatcttctcaggataaaagttcttcaagggggagagaggaggggaagcgt
gaaagggcttcctcccagcaccacatggacacaacagaagcccaggcagaggtcttgaaa
gaaactaaaaacgtctctctttgtagaaatgtcaattccatagagaacaacaacaatatt
gatggagaaactcccaacaagcacctgtctgaagcaacaaccagagaatccagacagacc
acagaaaatgaagaagaggaggaaaggggcaagcaaaggcagggaaaggagacagccatg
gtagattcacagaagctctcagagactggagaggagacgccaaaaaccttctcagcgcgt
aagatctctcttggcaacaacaaatcatccccaggcacaagcagcgcagaggcggagcag
gaggctgggggagtggctggtcgcaaaaggagatggggctccagcacggttgtcactgcc
aagaagccttccatcagcatcaccacagattcactgaagtctctgattcccgacatcaaa
cccagtttgggtcaggaggcagtagtggatctacatcccgaggaagctgccctctccggg
gcagaggaggaagacagggagcgctcggagcaggacctccaaatccgccgcactgtcaca
caagtggtgcacgcagaaagcccggagaatggggagaacgaggcaaagaggagcaggcga
caggaggtagaggaggaggactgtcgggctgagcaagacagaataaagacccaggaggag
caggtggaggtctccctccctggaactgtggaagcccagattccagcacacaccagccct
gatgtagaaatgaacactgtgactcccagcgacaccctcattcgtcgctcaatcagccag
cagaaaacgggcgtttccatcaccatcgatgatcctgtccgcacagcccagcagccctcc
ccaccccgaggaaaagtctccaatattgtccacatatgcaacctggtgaggccgttcaca
ctgggacagctgaaggagctgctcagcagaactggaacgctggtggaggacgggttctgg
attgataaaatcaagtcccactgctacgtcacttattccagtgtagaggaggcagttgct
acacggacagctctgcatggagtgaagtggcctcagagcaacccaaaagtcctcagtgtg
gacttctgccagcaggatgagttggacttccacaaaagtttgggaacagcagaacggccg
ggtgatgatcaggggcccggccccggccgtgggcgagcgctgggcctccccccgctgctt
ccagagcgagaccaatgggctgaacgggagcgggagatggagcgccgagagcgggctcgg
gcagagcgcgagtgggatcgggacaagatcaaggagttcgggaagcatggagaggacaag
gaggggggttctcggagatcacgttccagggagaggcgacgtaaggaaaggggaaagagc
aaggagaagaaggcggataagaaggctgatgaacctcctgcaaagttgctagatgatttg
ttctgcaaaactaaagcaactccctgcatttattggcttccactgactgatgaacagtat
gttcagcggcaagctgcccgagcagagcggatgaaggagcgggagaaactaaggaaagag
ctcgaagaggaggaggagaagaaaagggaagaggaacgcaaggaacgaatgaaagccaca
ggggccacaaccggagaccagggcgagggggagaaggacaaggaccgagacagggagagg
gacagaaacagagaccggggcagggaccgggaccgggagagggagaatgacaagcgcagg
gatagccatcgtagaccaggggccagcggggcaagctccagccggcgttcacgcagccgc
agcgaccccagagaccggaggcgctga
DBGET
integrated database retrieval system
