Oryzias latipes (Japanese medaka): 111949311
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Entry
111949311 CDS
T02443
Name
(RefSeq) E3 ubiquitin-protein ligase Topors-like isoform X1
KO
K10631
E3 ubiquitin-protein ligase Topors [EC:
2.3.2.27
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ola04121
]
111949311
03036 Chromosome and associated proteins [BR:
ola03036
]
111949311
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ola03037
]
111949311
Enzymes [BR:
ola01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111949311
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
111949311
UBL E3 ligases
111949311
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
111949311
Cilium and associated proteins [BR:
ola03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
111949311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_UBOX
zf-rbx1
zf-RING_5
zf-C3HC4_4
zf-ANAPC11
Rad50_zn_hook
TMEM51
PWI
Motif
Other DBs
NCBI-GeneID:
111949311
NCBI-ProteinID:
XP_023822104
LinkDB
All DBs
Position
18:487837..492862
Genome browser
AA seq
1207 aa
AA seq
DB search
MPLTARGSSRRKRRRKAAEEQPEPAETPAEVMAPTRMKLRRRDNAAAGPSGGGDGPGVET
RGATRTSSRRKNKAAAASSSSLRAAIAVEETSPDSKCPICLDRFNNLAYLDRCLHRFCFP
CIQEWSHNKAECPLCKQPFSSILHSVRAEDDFKEYTPQPAPPHSSVAATVAMVAAMAARS
DHHMRLMLRRHQAEDGRETATRRRRRERAARAGAAEDRTGLWEWYLGSRHLPVTPSPPST
ALLNFSTTSERARRRHVNLLAARQRLKRQRLAYRRTLYRHGIRVRGVAGVTGLEGQRDIT
AESFRQNPAHLNRLRRWVRRELKVLYGAHATLVDIVQRIVMERMACHGLDDTAAMEEELR
PFLLGRTEHFLHELLSFARSPLAMDSYDMQAEYEPLPGTLELDGLSSSSNSSSVIAISEE
EGDRGGRSLGASDDVIQSGSCLSQSGWDDETPGPSYSTAEPSPQHNSFSPAHQEPPNEEP
ARTGEEEGEECEIVGYKKPIAERTPELVQLSSDSEEEEQKKEAEPEEKSAPPTTCTPPAP
PSTSTDCKEVPEAQRTSEGAAACRVRSWSGSSEGSRSSLRSLSPATPPWRGPGGASREGK
SACRERRTKSQRGGCGRKSGTLCNPNRSIYPPMLRRCSPLSSSDSSPDPTWELRGAQVSP
LSSLVSTPSCSSSSSPLCSSPPPRTPPTPTLSPAERPHQAEKPGGKRKYKSRHLDADAKD
PSWRPKGGKNSRKKKKKRSQREESKWATDSVQSRRSREERSPSVEIIYEGVASSTQTPLR
RRRKRQRRTQLSSPPVIITLDSDSSPGPAHNSASSSPLSSQQTVDFSDLPPLSLAHSAGV
GRALDVGELPANILDPGSEGSDPELAGRSQSRIDIQSESDVDVEKVEGAGEDGPITAADT
EGADTSRAPTPKAEPDGTGPGGSGVLSPPLIPLSPTIPPPPTDTDSKCRDAPPLPKWAGP
IQPHSRNTPPPLKHKDAGCPQWPPLSPSKTRPSEPPLLGEGPTIPHFVTLKRPPLKAGLG
PHTQPLPSCGSDPSPPSSEKTSSSSYDPPLSVYPSPSFRLHSPPHTDSTSTVLHPPSCAA
AVGGDFLSGVTCRPVLAPPTNCLPAPKGEELSEMLSRLRSVLNAPDPHPVSPRPPYGTPS
PAYNADQPQDRNSPDPPADFRLDRLLNHTALMPPTSDPHPLPRKFRAEADTSPPHRLPDA
LRQSEPS
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgccgctcacggcgaggggctcttcccggaggaagaggaggaggaaggcagcggaggag
cagccggagcccgcggagaccccagcagaggtgatggcgcccaccaggatgaagctgcgt
cgccgtgacaacgccgctgctggtccctcaggaggaggcgatggtccgggagtggagacc
cgaggggccacccggaccagcagcaggaggaagaacaaagcagccgccgcctcctcctcc
tccctgcgggcggccatagcggtggaggagacgtcgccggactccaagtgccccatctgc
ctggaccgcttcaacaacctggcgtacctggaccgctgcctgcaccgcttctgcttcccc
tgcatccaggagtggtcgcacaacaaggcggagtgtccgctctgcaagcagcccttctcc
tccatcctgcactccgtccgcgccgaggacgacttcaaggagtacacgccgcagcccgcg
cccccccacagcagcgtggcggccaccgtcgccatggtggcggccatggcggcgcggagc
gaccaccacatgcggctgatgctgaggaggcaccaggcggaggacggcagggagaccgcc
acccggaggcggaggagggagcgggcagccagggccggagcggcggaggacagaacaggg
ttgtgggagtggtacctcggctcccgccatcttcccgtcacgccctcgcctccctccacc
gcactcctgaacttcagcaccaccagtgagcgcgctcgccggcgccacgtaaacctgctg
gcggcgaggcagcggctgaagaggcagaggctggcttaccgccgcaccctctaccgccac
ggaatacgggtccgcggcgttgccggggtgaccggcctcgaaggccagcgtgacatcaca
gcagagagcttccgccagaaccccgcccacctgaacagactgcggcgctgggtccgccgg
gagctgaaggtgctgtacggcgcgcacgccaccttggtggacatcgtccagcgcatcgtc
atggagcgcatggcgtgccacggcctggacgacaccgccgccatggaggaggagctgcgg
cccttcctcctgggccgcaccgagcacttcctgcacgagctgctcagcttcgcccgctcg
ccgctcgccatggacagctacgacatgcaggcggagtacgagccgctgcccggcaccctg
gagctggacggcctgagcagctcctccaacagcagctccgtcatcgccatctcagaggag
gagggggacaggggggggcggtccctgggcgccagcgatgatgtcatccagtcgggaagc
tgcctcagccaatcaggctgggacgacgagactccaggcccctcctactccactgctgag
ccatcgcctcagcacaactcattcagccccgcccaccaggagccacccaatgaggagcca
gcaaggacgggggaggaggagggggaggagtgtgagatcgtgggatacaaaaagccgatc
gcggagcgcacccccgagctcgtccagctgtcttccgactcagaggaggaggagcagaag
aaggaggcggagcctgaggagaaatctgcacctcccaccacctgcactccccccgctcct
ccctccacatccaccgactgcaaggaggtgccggaagctcagaggacctctgagggagcg
gcggcctgtcgcgttcgctcgtggtcgggaagctccgagggcagccgcagttctctgcgc
tcgctcagcccggccacgcccccatggcgagggcccggtggcgcctcgagggaggggaag
tctgcatgcagagagaggaggaccaaatcacagagggggggctgcgggaggaagagcggc
actctctgcaaccccaaccgctccatttacccccccatgctgcgccgctgctcgccgctc
tccagctcagactcctcccccgaccccacctgggagctgcgtggcgcccaggtgtccccg
ctctcctcactcgtgtccactccttcctgctcctcctcctcgtcgcctctctgctcctcc
ccacctccacgaacgccgcccacccccacgctttcccccgctgagcggcctcaccaggcg
gagaaacccggcgggaagcggaagtacaagagccgccatctggacgccgacgccaaagac
ccgtcatggaggccgaagggaggcaagaattcaaggaagaagaagaagaagaggagccag
agggaggagtctaagtgggcgaccgacagcgtccagagcaggaggtccagggaggagcgc
agtcccagcgtggagatcatctacgagggcgtggccagctccacgcagacgccactcaga
cgccgcaggaaacggcagcgcaggacgcagctcagcagcccccccgtcatcatcactctg
gacagtgacagcagccctggccccgcccacaacagcgccagcagcagcccgctcagcagc
cagcagaccgtcgacttctccgacctcccccccctctctctggcgcactcggccggcgtg
ggccgggctctggacgtcggggaacttcctgccaacattttggatccgggttcagagggg
tccgatccggagctggcgggtcggtcccagagccgcattgacatccagagcgagagcgac
gtggatgtggagaaggtggaaggcgccggcgaggacggaccaatcacagcagccgacact
gaaggtgctgacacaagccgggcccccacccccaaagcagaacccgacggcaccggacct
ggggggagtggggtgttatcccccccactaatccccctctccccaaccataccacccccc
cctacagatacagacagcaagtgcagggacgcaccccccctccccaaatgggccggtccc
atccaaccgcacagcaggaacaccccgccccccttgaaacacaaagacgctggctgtcct
cagtggccccccctgtctcccagtaagacccgcccctctgagcccccgctactgggggag
ggcccaaccatcccccactttgtgacgctaaagagaccccccctgaaggctgggcttggc
ccccacacccagcccctcccctcctgtggctctgatcccagcccccccagttctgagaaa
acaagcagctcctcgtatgaccccccactttctgtttacccttccccctcctttcgcctc
cattcacccccccacactgactctacctccaccgtcctccacccccccagctgtgctgct
gctgtgggcggagactttctctcaggagtgacctgcaggcccgttttagccccgcccacc
aactgtctgccagccccaaagggggaggagctttctgagatgctgagcagactccgctca
gtcctgaatgcccccgacccccacccagttagcccccggcccccatacggcaccccctct
cccgcctacaatgcagatcagccccaggaccggaacagtcctgacccccccgccgacttc
cgtttggaccgcctcctgaaccacacggccttaatgccccccacctccgacccccacccg
cttcccaggaagttcagggctgaggccgacacctcacccccccacagacttccagatgcc
ctcagacagtctgaacccagctga
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