Horticoccus luteus: K0B96_09105
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Entry
K0B96_09105 CDS
T07405
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ole
Horticoccus luteus
Pathway
ole02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ole00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K0B96_09105 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ole03021
]
K0B96_09105 (rpoD)
Transcription machinery [BR:
ole03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K0B96_09105 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Thg1
Motif
Other DBs
NCBI-ProteinID:
QYM77489
UniProt:
A0A8F9TQT4
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All DBs
Position
2177513..2179312
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AA seq
599 aa
AA seq
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MSRKAKSADSHPQSEAVEAALEKNQPVAGDNLPVDVPGGINEKIRQLIRLSKEQGYLTFD
DINEALPESVENQEEIDNVLSILQNLEIEILEPDQVDDYKQRMEEAEEEETRSSQHDILD
DPVRMYLKQMGQVPLLTREQEVEISKRIETAELRAQEALFQAAAIGAYVGTLGRKLLNRE
ERFDRIVIDKKIDSRESYFKGLPKLVETTEDSEAGTAEAWAEFLKARDEATRKRVLAKFH
KRENALRANFGKFFFKLKVYEEYLERLRPVLDEIETIEAQLERARHPKTKKDAAIDSRGL
QARLRQIEAEQRIAPAQLLAVVRQTFVHVREAHKAKTEMVEANLRLVISIAKKYTNRGLS
FLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETL
NKVMQVQKQLLQEFGHEPTPDEVADEMNLPVERVQQIMKMAQQPISLQSPVGDGDDTSFG
DFIEDKSAENPYDMTAYSLLREKIVDVLDSLTERERRVLSLRFGLQDGYSRTLEEVGKQF
KVTRERIRQIEAKALRKMRHPTRIRQLHGFFDAEQIDNAQNLLKIAAASARPPGLPPLR
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgcaaagccaagtccgccgattcccaccctcagtcagaagccgtcgaagccgcg
ctggagaaaaaccagccggtcgctggcgacaatctccccgtcgatgtccccggtgggatc
aacgagaaaatcaggcagctcatccgcctctcgaaagaacagggctacctgactttcgac
gatatcaacgaagcgctgcccgagtccgtcgaaaaccaggaggaaatcgataacgtcctc
tcgatcctccagaatctcgaaatcgagatcctcgagcccgatcaagtcgacgattacaag
cagcggatggaagaggcggaggaagaagaaacgcgctcctcccagcacgacatcctcgac
gaccccgtccgcatgtatctcaagcagatgggccaggtcccgctgctgacgcgcgaacag
gaagtcgagatctccaagcgcatcgagaccgccgaactccgcgcccaggaagcccttttc
caagccgccgccatcggcgcctacgtgggcaccctcggccgcaagttgctcaaccgtgaa
gaacggttcgaccgcatcgtcatcgacaagaaaatcgacagccgcgaatcctacttcaaa
ggcctgcccaaactcgtcgagaccaccgaggattccgaggccggcaccgccgaagcctgg
gcggagttcctgaaggcccgcgacgaagccacgcgcaaacgcgtcctcgccaagtttcac
aaacgcgaaaacgccctgcgcgccaacttcggcaaattctttttcaagctcaaggtttac
gaggaatacctcgagcgcctccgccccgtgctcgacgaaatcgagacgatcgaggcccag
ctcgagcgcgcccgccaccccaagaccaagaaggatgccgccatcgattcgcgcggtttg
caggcccgcctccgccagatcgaagccgaacaacgcatcgctccggcgcagctcctcgcc
gttgtccgccagaccttcgttcacgtgcgcgaagcacacaaggcgaagaccgaaatggtc
gaggccaaccttcgcctcgtcatttccatcgccaagaaatacaccaaccgcggcctctct
ttcctcgatctgattcaggagggcaacatgggcctcatgaaggccgtcgagaaattcgaa
taccgccgcggctacaagttctccacctacgccacgtggtggattcgtcaggccatcacc
cgttcgatcgccgaccaagcccgcacgatccgcatcccggtccacatgatcgagacgctc
aacaaggtgatgcaggtccaaaagcaactccttcaggaattcggccacgagccgaccccc
gacgaggtcgccgacgagatgaacctgcccgtcgaacgcgtgcagcagatcatgaagatg
gcccagcagcccatctcgctgcaatcgcccgtcggtgatggtgacgacaccagtttcggc
gatttcatcgaagacaagtccgccgagaatccctacgacatgacggcctactcgctcctg
cgcgaaaagatcgtcgatgtgctcgattccctcacggaacgcgaacgccgcgtgctctcc
ctgcgcttcggcctgcaagatggttacagccgcacgttggaggaagtgggcaaacaattc
aaagtcacccgcgaacgcatccgccagatcgaggccaaggccttgcgcaagatgcgtcac
ccgacccgcatccgccagctccacgggttcttcgatgccgagcaaatcgacaacgcgcag
aacctgctgaaaatcgccgcggcctccgcccggccgcccggtctcccgccgctgcgctga
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