Osmia lignaria (orchard mason bee): 117601086
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Entry
117601086 CDS
T09775
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
olg
Osmia lignaria (orchard mason bee)
Pathway
olg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117601086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olg03019
]
117601086
03041 Spliceosome [BR:
olg03041
]
117601086
03009 Ribosome biogenesis [BR:
olg03009
]
117601086
03016 Transfer RNA biogenesis [BR:
olg03016
]
117601086
Enzymes [BR:
olg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117601086
Messenger RNA biogenesis [BR:
olg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117601086
Spliceosome [BR:
olg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117601086
Complex C
U4/U6.U5 tri-SnRNP related factors
117601086
Ribosome biogenesis [BR:
olg03009
]
Eukaryotic type
Pre-60S particles
Helicases
117601086
Transfer RNA biogenesis [BR:
olg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117601086
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
117601086
NCBI-ProteinID:
XP_034173309
LinkDB
All DBs
Position
Unknown
AA seq
1019 aa
AA seq
DB search
MANFTDDLFDVFDETDDILEIIPTPVKPKDVNTTPNEKETNAEGLKRELNNESDDIISKK
LKLDPVLEDLNIEELAPRIKIHTIETIESSTHEVAVPPDYDYVPLEQKQSKPAKEYKFVL
DPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQKYR
EFYEEFKDVGLVTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDK
ERGVVWEETLILLPDNVHYVFLSATIPNARQFVEWVADLHKQPCHVVYTDYRPTPLQHYI
FPVGGDGIHLVVDENGQFKEENFNRAMACLQHGDAAKGDTKGRKGGIRPSNAGQTNIFKM
VKMIMERNFAPVIIFSFSKKDCEIYAMQMAKLDLNTLEEKKLVDEVFNNAMDVLSEEDRR
LPQVENVLPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVL
FTASRKFDGKDFRWITSGEYIQMSGRAGRRGLDEKGIVILMIDEQVSPVIGKAIIQGKPD
PINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQASIPILYNKVKELQATYNAVTI
DKYSQISSYHSIREQLERLSIEFRSFLTKPEYLLPFLQPGRLVKVKNANETFDWGIIVNF
KKKNPKNPTKENTVIIIDILLHISKESSEGCPVPCREGEEGDVEVVPVLHTLISQISSLR
LYYPKDLRPSDNRKSVLKTIQEVKKRFPNGPPLLNPITDMHIADEGFKDIIKKIEVLEEK
LYAHPLHKDPTINTLYEQFLHKEELGNQLKQAKLELKQAKSILQMDELKCRKRVLRRLAY
CTASDVIELKGRVACELNGADELLMTEMIFNGLFNSLSVPQMVALISCFVCDDKSNEMPK
STEELSGPLRQMQDLARRIAKVSTEANLELDEDAYAERFKPYLMDVVYAWCKGASFLKIC
KMTDIFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggctaattttactgacgatttatttgacgtttttgacgaaacagatgatatactagaa
atcatcccgaccccagtgaaaccaaaggatgtaaatacaacaccaaatgaaaaggaaaca
aatgcagaaggactaaaacgagaacttaacaatgaatcggatgacataatttctaagaaa
ttgaagttggatcctgtcctagaagatttaaatatagaagaactagcaccacgtattaaa
atacataccatagaaacaattgaatcatctactcatgaggttgctgtaccaccagattat
gactatgtaccattggaacagaaacaaagcaaaccagctaaggaatataaatttgtgtta
gatccttttcaaaaagaagcaatattgtgtattgagaataaccagtctgttttagtttct
gcacatacatcagctggtaaaactgttgttgcagagtatgctatagcatgttcattaaga
gacaaacaaagagtaatctatacaactcctataaaagcattgagtaatcaaaagtataga
gaattctatgaagagttcaaggatgttggtttagtgactggagatgttacaattaatcca
acagctagtgtgcttatcatgactactgaaattttaagaaacatgctttacaggggatca
gaggtaatgcgtgaagttggttgggtaatttttgatgaaatccattatatgcgtgacaag
gaaagaggtgttgtttgggaggaaacattaatattattacctgacaatgtacattatgta
tttctttctgcaactatacctaatgcacgacaattcgtagaatgggttgcggatttacat
aaacaaccatgtcacgttgtttatacagattatagaccaactcctctgcaacattacata
tttcctgttggtggagatggaatccatttggttgtagatgaaaacggacagtttaaagaa
gaaaattttaacagagcaatggcttgtttacaacatggtgatgcagctaaaggagacact
aagggtcgtaaaggtggtattcgtccctcaaatgctggacaaacaaacatttttaaaatg
gtgaaaatgattatggaaagaaattttgctcctgtaattatatttagcttttcaaagaaa
gattgtgaaatttatgcaatgcaaatggctaaattggatttaaatacattagaggagaag
aaactagtagatgaagtttttaataacgcaatggatgttcttagtgaggaagatagacgt
ttgcctcaagttgagaacgtgttacctcttttaagacgaggtataggtattcatcatggt
ggtcttttaccgattttaaaagaaaccgtggaaatattatttggtgaaggattgatcaag
gcactatttgcaacagaaacttttgcaatgggtctaaacatgccagcacgaacagtttta
ttcacagcatcacgaaaatttgatggtaaagatttccgttggattacatccggagaatac
atacaaatgtctggtagagcaggcagaagaggtttggacgaaaaaggaatagtaatatta
atgatagacgaacaagttagtccagttattggaaaagcaattatacagggaaaaccagat
cctattaattcagcatttcacttaacttacaacatggttttgaatctgttgagagttgaa
gaaattaatccagaatatatgcttgaaagaagtttttatcaatttcaaaatcaagcctct
attcctattttatacaataaggtaaaagaattgcaagctacatataatgcagtaactatt
gataaatatagtcagatatcttcttatcacagcatacgtgaacaacttgaacgccttagt
atcgaattcagatcttttttaacaaaaccagaatatttacttccattcttgcaacctgga
agattggtaaaagtgaaaaatgcaaatgaaacgttcgactggggtattattgtgaacttt
aaaaagaaaaatcccaaaaatccaacaaaagaaaatacagttattattattgatatctta
cttcacatttctaaagaatctagtgaaggatgcccagtgccctgtcgtgaaggagaagaa
ggcgacgtggaagtagttcctgtcctacatacattaatttctcaaattagttcacttaga
ttatattatccaaaagatttaaggccatctgataataggaaaagtgtattaaagacaata
caggaagtcaagaaaagatttccaaatggaccaccattattgaatcctattacggatatg
cacattgcagatgaaggttttaaagatattattaaaaagattgaagtattagaagaaaaa
ttatatgctcatcctttacacaaggatcccactataaatactttgtatgaacaattcctt
cacaaagaggagttggggaatcaattgaaacaagccaagttggaattgaaacaagctaaa
tccatacttcaaatggatgaattaaaatgtagaaaacgtgtactgcgaagattagcctac
tgcacagcatcagatgttatagaattaaagggtcgagtagcttgtgaacttaatggagct
gatgaattgttgatgacagaaatgatctttaatggattgtttaattccttaagcgtacct
caaatggtagcgttgattagttgtttcgtttgcgatgacaaatcaaatgaaatgcccaaa
agtactgaagaattaagcggtccacttcgacagatgcaagatttggcacgaagaatagca
aaagtatctacagaggctaatttagaattagatgaagacgcatacgcagaaagatttaaa
ccatatttaatggatgttgtatatgcttggtgtaagggtgctagttttttaaaaatttgt
aaaatgacggatatatttgaaggttcaattatacgatgtatgcggcgtttggaagaagtt
cttagacaattatgtcaagcagcaaaaaacattggaaacacagatttagaaaataaattt
agcgaagcgattaagcttataaaacgtgatattgtttttgctgcatctttgtatttataa
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