Osmia lignaria (orchard mason bee): 117602159
Help
Entry
117602159 CDS
T09775
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
olg
Osmia lignaria (orchard mason bee)
Pathway
olg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117602159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olg03019
]
117602159
Messenger RNA biogenesis [BR:
olg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
117602159
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
Rrp44_CSD1
PIN_4
CSD2
Rrp44_S1
OB_HELZ2
OB_RNB
Toxin_R_bind_C
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
117602159
NCBI-ProteinID:
XP_034175685
LinkDB
All DBs
Position
Unknown
AA seq
979 aa
AA seq
DB search
MLKTKVFFRKTKGGKVFKTVREHYLRDDIHCGSKACDKCLYRNRNIILDDEDSGVKSSKL
LYPYYLLLDTNIILDQIDVLEEDVICNVIILQTVLEEIKHRSSTVYKKLKDVIANTRRKF
YVFVNEHHKETYIERNPGESANDRNDRAIRVAAKWYNMHLSSLGCKMKTVLLTDDIRNRE
LAIAEGIPVLSMEDYVTSLENSGFLADKLCKKSYGTDSDGQTVFPCHLTPSELHEGIKNG
KLLQGTFAISRENFLEGFVKVERAEKEIFIQGRSNLNRAVDGDTVALELLAEDQWSSPSD
IVLQDEEADVDDVIETEKVLDKINSSNKMQKTPTGKIVGIIRRNWRQYCGILQPSNIEGN
VRHLFVPAERKIPKIRIETRQYSVLSKQRIIVAIDSWPRNSRYPLGHFVRALGEIGDKAT
ENKVILLEHDVPHSRFSDAVLSSLPKMPWRITDADLVQREDLRHLDICSVDPPGCTDIDD
ALHCRELPNGNLEVGVHIADVTHFIRPGTALDKEAALRATTVYLVDTRIQMIPELLSTNL
CSLRGNEERLAFSCIWEMDKDANVINTRHCKSIIRSRAAMTYDEAQLKIDDATQQEPVAT
SLRNLNSLAKKLKKRRLENGALVLASPEIRFEVDSETHDPIDVEAKKLRETNSMVEEFML
LANISVAKKIVEEFPECAVLRRHPEPPLANFEPLIKAGKNQGFVINTNSGKELAESLDRC
HKENNPYFNTMLRILATRCMMQAVYFISGMHQPSEYFHYGLACPIYTHFTSPIRRYADVM
VHRLLAVCIGADATYPDLLDKKKNHALCHNLNYRNRMAQYAGRASVALNTHLFFRGKIQD
EEGYILFVRKNALQILIPKYGLEGTLYLNENKANSITFKYNNEDHSQTCGNVMFRTFDPV
IVQISLDRSNVQHEKLVFKLVKPYIAGFSVPSINTECSSVVLVQNPKEVPKRKMDVEKTS
DKNTKSGGSKKKRKNKKHQ
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaaacgaaagttttctttagaaaaactaagggaggaaaggtttttaagactgtt
agagaacattatctcagagatgatattcactgtggttctaaagcatgtgataaatgcttg
tacagaaaccggaatataattttagatgatgaagattcaggtgtaaaaagctcaaaacta
ttgtatccatattaccttctacttgatactaacattattttagatcagattgatgttttg
gaagaagatgttatctgtaatgtaataatattacaaacagtgttagaagaaataaaacac
agaagttctactgtatataagaaattgaaggatgtaattgctaatacacgtagaaaattt
tatgtatttgttaatgaacatcataaagaaacttacattgaacgtaatccaggtgaaagt
gcaaatgacagaaatgatagagcaatcagagttgcagcaaaatggtataacatgcattta
agttctcttggttgcaaaatgaaaactgtgttattaactgacgatattcgtaatagagag
ctggcaattgcagaaggaatcccggttctttcgatggaggactatgttacttcattggaa
aattcaggatttctggcagataaattatgtaaaaagagttacggcacagattccgatggt
caaacagtttttccatgtcaccttacaccatctgaattacacgaaggtatcaaaaatggc
aaacttctacaaggaacatttgccatatcaagagaaaatttccttgaaggattcgttaaa
gttgaaagggccgagaaagagatttttatccaaggtcgtagtaaccttaatagagcagtt
gatggtgatacagttgcattagaactcttagcagaggatcagtggtcatctcccagtgac
attgtcttacaagatgaagaagcagatgttgatgatgtgatagaaactgagaaagtatta
gataaaattaattcttcaaacaaaatgcaaaagacaccaactgggaagattgttggtatt
attaggagaaattggaggcaatattgtgggatacttcagcctagtaatatagaagggaat
gtgagacatttgtttgtgccagctgaacgaaaaatacctaaaataagaattgaaactaga
caatactcagtgttaagtaaacaaaggattatcgttgccattgattcttggccgcgtaat
tcaagatatcctcttggtcattttgtacgtgcattgggtgaaataggagataaagcgacc
gaaaacaaagtaatacttttagagcacgatgttccgcatagtagattctccgatgcagtt
cttagttcacttccgaagatgccatggcgcatcacagatgctgatttagtacaaagagaa
gatcttagacacctggatatatgttcagttgatccaccaggatgtacagatattgatgat
gcgcttcattgtagagaactaccaaatggtaatcttgaagtaggtgtacatatcgcggac
gtaacgcactttattagacctggaactgcattagataaagaggcagctttacgagctacg
accgtgtatttggttgacacaaggattcaaatgattccagaactactcagtacaaatctt
tgttctttgaggggaaatgaagaaagattagcattttcctgtatatgggaaatggacaaa
gatgcaaatgtaattaatactagacattgtaaatctattattcgttcgcgagcagcaatg
acttacgacgaggctcagttgaaaatcgacgatgctactcagcaagagccagttgcaaca
tcattgaggaatcttaatagtttagcaaagaagttaaaaaagagacgtttagaaaatggt
gcactagtattggcatctcctgaaatccggttcgaagtggattctgaaacccacgatccc
attgatgtggaagctaaaaaattgcgagaaactaattccatggttgaagaatttatgttg
ctagcaaatatttcagttgctaaaaagattgtagaagaatttccagagtgtgcagtatta
agaagacatcctgagccaccgcttgccaattttgaaccgcttataaaagctggaaagaat
caaggctttgttataaacactaacagtggtaaagaattggcagaatctttagacagatgt
cataaagaaaacaatccttatttcaacactatgttgagaatactcgctacacgttgtatg
atgcaagctgtgtatttcattagtggaatgcatcaaccaagtgaatactttcattacggt
ttagcatgccccatttatactcactttacatcacctattcgaaggtatgcggatgtaatg
gtacatcgtttattagcagtttgcattggagccgatgcaacatatcctgacttattggac
aagaagaaaaatcatgcgttatgtcataatctaaattatcgtaatagaatggcacagtat
gctggacgagcgtctgttgcacttaacacacatttgttctttagaggaaaaattcaggat
gaagaagggtacatactatttgtgcgaaaaaatgccttacaaatattaattccaaagtat
ggtctggagggaactttgtatttgaacgaaaacaaagcaaactctataacatttaaatac
aacaacgaggatcattcacaaacttgtggaaatgttatgttccgtacttttgatcctgtt
atagtgcaaatcagtttggacagatccaatgtacagcatgagaaattagtatttaaactg
gttaaaccatatattgcaggtttcagtgtaccttcaataaacacagaatgttcatcagtt
gtattagtacaaaatccaaaagaggtaccaaaaagaaagatggacgtagaaaaaacctca
gataagaacactaaaagtggaggaagtaaaaagaaaaggaaaaataagaagcatcagtag
DBGET
integrated database retrieval system
