Osmia lignaria (orchard mason bee): 117603357
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Entry
117603357 CDS
T09775
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
olg
Osmia lignaria (orchard mason bee)
Pathway
olg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
olg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117603357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
olg03041
]
117603357
Enzymes [BR:
olg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117603357
Spliceosome [BR:
olg03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117603357
Complex B
117603357
Complex C
U2 SnRNP specific factors
117603357
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
MscL
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
117603357
NCBI-ProteinID:
XP_034178299
LinkDB
All DBs
Position
Unknown
AA seq
774 aa
AA seq
DB search
MSYHRGGGNKPKGFGFAGFQMTGTKRSGSNIPPPPPNSTLSKQGYHTMNSITENALSACW
GMPKKRSKTEEEYFEDDDDPPPFSLEYIPAPGSPTYDWMKKSTPKQESDSDEDPLDAFMA
GIDAEVKKNTYEAQLAEDERKEDKSKGFRADIDCEDDEESYYRYMEENPTAGLQQEESDQ
EIEYDEDGNPIAPPKKKEIDPLPPIDHSEIQYESFEKNFYNVHDEIASLSKQQIDDLRKT
LGIKVSGPSPPNPVTSFGHFGFDDALIKAIRKNEYTQPTPIQAQAVPAALSGRDIIGIAK
TGSGKTAAFIWPMLVHIMDQRELKAGDGPIGLILAPTRELSQQIYQEARKFGKVYNIQVC
CCYGGGSKWEQSKALEGGAEIVVATPGRIIDLVKMKATNLTRATFLVLDEADRMFDMGFE
PQVRSICNHVRPDRQTLLFSATFKKRVEKLARDVLTDPVRIVQGDVGEANADVTQHVVVF
NNNPTGKWAWLLQNLVEFLSAGSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIER
NKVITAFKKKEVSTLVATDVAARGLDIPHIRTVVNYDVARDIDIHTHRIGRTGRAGEKGT
AYTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQSAWFRKSRFKGGKGKSLNVGGAG
LGFRGRPETSSTSSSGSSSQGSKDISEVVKKLERHGPGSDRLSAMKAAFRSQYTSQFRAS
SDHTWEQTITRPSVIMPPPPPVPPKPNTEQSRSQNSQASNTSGEKKRVRKSRWE
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgagttaccaccgtggaggaggtaacaagccaaaaggctttggatttgccggtttccaa
atgactggtaccaaaagaagcggctcaaatataccaccacctcccccaaattctacccta
agcaaacaagggtatcataccatgaattcaatcactgaaaatgctttgtccgcgtgttgg
ggtatgccaaaaaaacgtagtaaaaccgaagaagaatacttcgaggacgacgacgatcct
ccaccattctctttagaatatattccagcgcctggatctcctacctacgattggatgaag
aaatcgacgccaaaacaggagagcgacagcgacgaagatccgctggatgctttcatggct
ggtatagatgccgaagtgaagaaaaacacttacgaagctcagctcgcggaagatgagcgc
aaggaagacaagtctaagggattcagagcagatatcgactgcgaggacgacgaagaaagc
tattacaggtatatggaggaaaacccaaccgcggggttacaacaagaggaatctgaccaa
gaaatcgaatacgacgaggacgggaatcctatcgcgcctccgaaaaagaaagagatcgat
cctctgcctcccatcgatcatagcgagatacagtacgagtcgtttgagaaaaacttttac
aacgtccacgatgaaatcgccagcttaagcaaacaacagatcgacgatttgagaaagacg
ttggggataaaggtatctggtccctcgccgcctaacccggtcacaagtttcggtcatttt
ggttttgacgatgcgttaataaaagcaattagaaaaaacgaatatacccaacccactcct
atccaagctcaagccgttcctgccgcattaagtggcagggatataataggtatagcaaag
actggaagcggtaaaaccgcagccttcatttggcccatgttggttcacataatggatcag
agagaattaaaggctggcgacggacctatcggcttgattcttgccccaacaagagaattg
tctcaacagatttatcaagaagcaagaaagtttgggaaagtctataacattcaagtgtgt
tgctgctacggtggtggtagcaaatgggaacaaagtaaagcgttggaagggggtgcggag
atagtagtcgcaacaccgggtagaattatagatttagtcaaaatgaaagcgacgaatcta
accagagcaacatttctggtattagacgaagccgatagaatgttcgatatgggtttcgag
ccgcaagtacgttcaatttgtaaccacgttaggccggacaggcaaacgttgttgttcagt
gcaactttcaaaaagagggtagaaaagctagcgagggatgttttaacagacccggttagg
atagttcaaggggacgttggtgaagctaatgctgacgttactcagcacgtggtagtcttt
aataataatccaaccggcaagtgggcttggttgttgcagaatttggtcgaatttttaagc
gctggtagcctgttaatcttcgttaccaaaaagcttaacgcggaggagcttgcgaataat
ctcaagttgaaagagtttgatgttttgcttctgcacggtgatatggatcaaattgaaagg
aataaagtgatcacggcttttaagaagaaggaagtcagtactttggttgctactgacgtt
gctgcccgaggtttggacattccacatatcagaactgtcgtgaattacgacgtagcgcga
gatatcgatattcacacgcataggataggtagaacgggtcgagccggggaaaagggtacg
gcgtatacccttgtgacggaaaaggacaaagaattcgcaggacatctagtccgaaatttg
gaaggagcgaaccaggaggtaccaaagagtctgatggacttggcgatgcaaagcgcttgg
ttccgaaaatcgagattcaaaggtggaaagggaaaaagtttgaacgtcggaggagctgga
cttggctttagaggaaggcctgaaacttcgtcgacttcgagtagcggttcttcgtcgcaa
ggatcgaaggacattagcgaagtggtgaagaaattagagagacacggacctggtagcgat
cgattatccgctatgaaagctgcgtttcgcagtcaatacacttctcagtttcgggcatcg
tcggatcacacgtgggaacaaactattacacgtccttcggtgataatgccaccaccgcct
cctgtaccaccaaaaccaaatacggaacaatcgcgatctcagaatagccaagcatcaaat
accagcggggagaagaagagagtgaggaagagtcgatgggaataa
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