Osmia lignaria (orchard mason bee): 117606248
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Entry
117606248 CDS
T09775
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
olg
Osmia lignaria (orchard mason bee)
Pathway
olg03013
Nucleocytoplasmic transport
olg03015
mRNA surveillance pathway
olg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
olg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117606248
09122 Translation
03013 Nucleocytoplasmic transport
117606248
03015 mRNA surveillance pathway
117606248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olg03019
]
117606248
03041 Spliceosome [BR:
olg03041
]
117606248
Enzymes [BR:
olg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117606248
Messenger RNA biogenesis [BR:
olg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117606248
Spliceosome [BR:
olg03041
]
Complex C
Other components
EJC/TREX
117606248
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117606248
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117606248
NCBI-ProteinID:
XP_034184405
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQVVDGSGDIPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKNTCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaatgatgatcttttggattatgaagatgaggaacaaaccgaacaagtagtt
gatggaagcggggacatacctgctaagaaagaagttaaggggacatatgtatctattcac
agtagtggatttagggattttcttctgaaacctgaaatattacgtgcaattgttgactgt
ggttttgaacatccttctgaagtacagcatgaatgtattcctcaagcagtgcttggcatg
gatatattatgtcaagcaaaatctggtatgggaaaaacagctgtatttgtattagcaaca
ctgcaacaattagagttaactgaaaatcaagtttatgttcttgtaatgtgccacacgcgg
gaacttgcttttcaaatcagcaaggaatatgaaagatttagcaagtacatgcctcatgta
aaggttggagtattctttggtggcttgccaattcaaaaagacgaagaagtattaaagaac
acatgccctcatattgttgtgggtacaccaggtcgtatcctcgctctcgtacgaaataaa
aaattgaacctaaagcatttgaaacactttattcttgacgagtgtgataaaatgcttgaa
ttgttagacatgcgtagagatgtacaggaaatatttagaagcactccacacggcaagcaa
gtcatgatgttcagcgctacattgtccaaggagatacgtcctgtctgcaaaaaatttatg
caagatcccatggaagtctatgtggacgatgaagcgaagctcacattacatggtctacaa
cagcattatgtgaaactcaaagaaaatgaaaagaacaagaagctatttgaattacttgat
gttcttgaatttaatcaggttgttatctttgtaaaatctgtacaaaggtgtatggctttg
gcacaactattgaccgaacaaaattttcccgccattggtattcatagaggaatgactcaa
gaagaacgattatcgagataccagcagttcaaagattttcaaaaaagaattcttgtagct
acaaatttgttcggacgtggcatggatatcgaacgtgtaaatatagtattcaattatgat
atgccagaagattcggacacatacttgcatcgtgtagctagagctggtcgttttggtact
aagggtcttgcaattacattagtcagtgatgaaagtgacgctaaaatattaaatgacgta
caagaacgatttgatgttaatatcacagaattaccggatgaaatagatttagcttcatat
attgaaggacgataa
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