Osmia lignaria (orchard mason bee): 117608100
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Entry
117608100 CDS
T09775
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
olg
Osmia lignaria (orchard mason bee)
Pathway
olg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
olg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117608100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olg03019
]
117608100
03041 Spliceosome [BR:
olg03041
]
117608100
Messenger RNA biogenesis [BR:
olg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117608100
Spliceosome [BR:
olg03041
]
Complex B
Other components
Prp19-related factors
117608100
Complex C
117608100
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
RPN7
TPR_10
DHR-2_Lobe_A
PPR
ARM_TT21_C
SNAP
NRDE-2
Microp_apicomplexa_6
Motif
Other DBs
NCBI-GeneID:
117608100
NCBI-ProteinID:
XP_034188584
LinkDB
All DBs
Position
Unknown
AA seq
841 aa
AA seq
DB search
MLERKDPEGNLYVFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSSNLNIVYERALKE
LPGSYKLWYNYLRQRVSQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQ
CYITRTRQVFDRALRALPITQHHRIWPLYIEFLKKHNVYETAIRVFRRYLKLAPEDTEEY
IEYLISIGKLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKRMEEASKNPTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRV
MLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENGQIADARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENKYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATSAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEENT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNATNPPSDVPLDAMRLLDSKTPSTDNVTTYKDSIKFV
RGVTEKDGKPESQVNNPDEIDIDVDEVNDNEVDVEEDIPVEKQSIPSQVFGSLKTTEGED
D
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgcaaagatccagaaggaaacttatacgtttttaatgaagaagatttaccg
tatgaagaggaaatcttaagaaatccttattctgtgaaacattggcaacgttatatagat
catttaaaaagcactaaaagtagtaatttaaatattgtatacgagcgtgcgttaaaagaa
cttcctggaagttataagttatggtacaattacctacgtcaacgtgtgagccaattgaag
ggaagatgcataacagatcctctttacgaagatgtaaataatgcattcgaacgtgcatta
gtttttatgcataaaatgcctcgaatttggatggattattgtacattgatgactgaacaa
tgttatattacacgtactcgtcaagtttttgatcgtgcgcttagagctcttcctatcact
cagcaccatcgaatatggccattgtatattgaatttttaaagaaacataatgtatatgag
actgctatcagagtttttagaagatatctgaagttagctccggaagacacagaagaatat
attgagtatctaatatcaattggtaaactggacgaagcggctgtaaaactagcacagatt
gttaatcaagatgattttgtatcgaagcatggaaaatcaaaccatcaactgtggaatgaa
ttgtgtgatttaatatcaaagaatccttctaaaataaaatctcttaatgtagatgctatt
atcaggggtggtttaagacgttatactgatcaattagggcctttatggaattctttagca
gactattacgttcgtagtggtttatttgaaagggcaagagacatttacgaggaagcaatt
cagacagtaactactgttagagattttacccaagtttttgatgcttacgcgcagtttgaa
gaacttagcctcagtaaacgtatggaagaagcttccaagaatcctactgaagatgatgat
attgatttggaattaagattagcacgattcgaacatttaatggaaagacgtttattatta
cttaattccgtgctattaagacaaaatcctcataacgtgcaagaatggcataaaagggtt
atgctttatgaagggcaaccacacgagattatcaatacgtacacggaagccgtgcaaact
gtgcaaccacaattagcagtaggtaaactgcataccttgtgggttgcgtttggcaaattc
tatgaagaaaatggacaaatagcagatgctagagtagttttcgagaaagccactcacgtt
ccttataccaaagtcgatgaccttgcttctgtgtggtgtgaatgggcagagatggaaatt
aggcatggaaattataaagaagctctaaaactaatgcatcgtgccactgctatgccgttc
cgtaaagtagcttatcatgatgaaaccgaaactgtacaaatgagattatacaaatctttg
aaagtatggtctatgtacgccgatctggaagaaagttttggtacatttaagacatgtaaa
gcagtgtacgataaaatcatagacttaaaaattgcgacaccacaaatcattattaattat
ggtctctttttagaggaaaataagtactttgaagaagctttcagggcatacgaaaaggga
atcgcgcttttcaaatggccgaatgtttatgatatatggaatacttatcttactaaattt
ttaaaacgttatggcggcacaaaattggaacgaacacgagatttatttgaacagtgcttg
gaacattgtccaccgaaatatgccaaagctttgtatttattatacgccaaattagaagaa
gaacatggtctagccaggcatgctatgtccgtgtatgaacgagcaacaagcgctgttctc
ccggaagaaagatttgagatgttcaacatatatatcaagaaagcagcagatatatatggc
gttccaaaaacgagacagatttacgaaaaagccatagaagtacttaacgaagagaatacg
agagaaatgtgcttgcgatttgctgaaatggaaacgaagttgggagaagtcgacagagct
agggcaatatatgcgcattgcagccaaatatgcgatccaagggtaacatcaaatttctgg
caaatatggaaagaatttgaagtgagacacggcaatgaagatacaatgcgtgaaatgctt
cgaattaaacgcagcgttcaagctatgtacaatacccaagtgaacatgatgtctgctcaa
atgttaaacaatgctacgaatccaccatccgatgtaccattagatgcaatgcgacttcta
gatagtaaaacaccaagtacagataacgttactacgtacaaggatagcattaaattcgtt
cgtggtgtaactgaaaaagatggcaaaccggaatctcaagtaaataatccagatgagatt
gatattgacgtagacgaagttaatgacaatgaagttgacgtggaagaagatatacctgtc
gagaaacaaagtattccgtcacaagtatttggtagtttaaaaacaactgaaggagaagac
gactaa
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