Osmia lignaria (orchard mason bee): 117608777
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Entry
117608777 CDS
T09775
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
olg
Osmia lignaria (orchard mason bee)
Pathway
olg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
olg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117608777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
olg03041
]
117608777
Enzymes [BR:
olg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117608777
Spliceosome [BR:
olg03041
]
Complex C
Other components
Step II factors
117608777
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
ResIII
T2SSE
AAA_30
AAA_16
ATPase_2
ATPase
ABC_tran
Sigma54_activ_2
PhoH
AAA_24
cobW
Sigma54_activat
AAA_7
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
117608777
NCBI-ProteinID:
XP_034190259
LinkDB
All DBs
Position
Unknown
AA seq
1136 aa
AA seq
DB search
MDTSNDSALYRLEGTDKNQTGGLVIRKKPSDHTFKKPQASVLGLDKLAKRKRQENAQESK
SFKSESGSPKSESKERKYRSYAEETPTHTGGVNYEAQKRLESRLKHQRLSAQEKNYRHGH
KDRDRDRNRDRERSRSRDSNRQTPLRFKDEPQTPVFKTRDPTSKSNWDDDEDEEPRKSSW
DHPTPNLYSSRDGRDSIRSEFTPSYKYNSWIKDRKASGATPRIDGEEKELWEEEQQRLDR
EWYALDDGENHAFADVSEEYTRKKEMELEAKRQKRLSAQQRQINKDNELWERNRMLTSGV
VSSLDHDDDPDDEGETRVHLLVHNVVPPFLDGRIVFTKQPEPVVPVRDPTSDMALVARKG
SALVRAYREQKERKRAQKKHWELAGTHIGNIMGVRDRHKDDREEPGQETDFKAGQKYARH
IKGDEVTGEAKYRSIQHQRRSLPVFAVRQELLNVIRENSVVVIVGETGSGKTTQLTQYLH
EDGYSRYGIIGCTQPRRVAAMSVAKRVSDEMATTLGEKVGYAIRFEDCTSKDTVIKYMTD
GILLRESLREGDLDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDSS
KFSTFFGNAATFQIPGRTFPVEVLHAKNSVEDYVDAAVKQVLQIHLQPRSGDVLVFMPGQ
EDIEVTCEALKERLAEIESAPPLSILPIYSQLPSDLQAKIFQRSEGGLRKCVVATNIAET
SLTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRAGRAGRTGPGTCYRLYT
RRQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQLWIL
GALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPSIFYRPKGR
EEDSDSAREKFQVPESDHLTYLNVYNQWKANGYSSSWCNDHFIHAKAMRKVREVRQQLEE
ILKQQKMEVVSCGTDWDVVRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLHPTSALFGM
GFTPDYVVYHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGRSGRAKRRQAMQHLH
EMEGQMKEAEEEMKARAQEQLEREQASIRKQEILTPGIREPGTPAPYRKTPGRLGL
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atggatacgtcaaacgactcagccttgtataggttagaaggaacggataaaaatcaaaca
ggagggttggttattcgaaagaaaccctccgatcatacatttaaaaagcctcaagcgtcc
gttttagggctggacaaactagctaaacgaaaaaggcaagaaaatgctcaagaatctaaa
tcgtttaaatccgagtcaggttcaccaaagtcagaaagcaaagaaagaaaataccgttct
tatgctgaagaaactccaacgcatactggtggagtaaattatgaagcgcagaaaagattg
gaatcgcgtttaaagcatcaaagattaagtgcgcaggagaaaaattataggcacggtcat
aaagacagagaccgagatagaaatagagatagagaaaggagtagaagcagagacagtaat
agacaaacgcctttgagattcaaagatgaaccgcaaactcctgtatttaaaacgagagat
ccaacgtctaaaagcaattgggatgacgatgaagatgaagaacctagaaaatcaagttgg
gaccatccgacgccaaatctgtatagcagtagagacggtagagatagcatcagaagcgaa
tttacaccttcttataaatataattcctggattaaagatcgaaaagctagcggcgctact
cctcgtatagacggagaagaaaaagaattatgggaagaagaacaacaaaggttagacaga
gaatggtacgccttagacgatggagaaaatcatgccttcgctgatgtatccgaagaatac
acccgtaagaaggaaatggaactcgaagcgaaaaggcagaaacgtttatcggcacagcaa
cgacaaataaataaagacaatgaattatgggaacgtaacaggatgttaacgtccggtgtt
gtgagctctttagaccacgacgacgatccggatgacgaaggagaaactagagtccatctt
ttggttcacaatgttgttcccccatttttggatggtcgaatcgtattcaccaagcaacca
gaacccgttgtacctgtgcgtgatccaacttctgacatggctcttgtagcaagaaaggga
tcggcattggtgcgagcgtatcgcgagcaaaaggaacgaaaaagagcgcagaagaaacat
tgggaattagctggcacgcatatcggtaatattatgggtgtacgggacaggcacaaggac
gacagagaagaaccaggtcaggaaactgatttcaaagcgggtcagaaatatgctcgtcac
ataaaaggcgacgaggttaccggagaagctaaatacagatccattcagcatcagaggagg
agtcttcctgtatttgctgtacgtcaagaattattgaatgttataagagagaacagtgtt
gtagttattgtcggtgaaactggaagcggaaagactacgcagttaacgcaatatcttcac
gaagatggttacagtcgttatggaataattggttgcacgcaacctcgacgagtagcagct
atgtctgtggctaaaagagtttccgacgaaatggctactactttgggagagaaagttggt
tatgctattcgtttcgaagactgtacttcaaaagatactgttatcaaatatatgactgat
ggtattttactaagagaaagtttaagagagggagatttggatcggtatagcgtgattatt
atggatgaagctcacgagaggtctttgtctaccgatgttttgttcggattacttagagag
gttgtggctagaagacacgatttgaaattgatcgtaacgtccgctacgatggattcaagt
aaattttcaaccttctttggaaatgccgcaacctttcaaattcctggccgtacttttcca
gtcgaggtgttacacgcgaaaaattcagtcgaagattacgtggacgccgcggtgaagcaa
gttttgcagattcatttgcaaccacgttccggtgacgtgttggtcttcatgcccggtcaa
gaggacatcgaggttacgtgcgaggcactgaaggagcgtttagcagagatagaatcagcc
ccaccgctttcgattttgcctatttattcgcagttaccctcggatttgcaagcgaaaatc
tttcagcgttccgaaggaggcctacgaaaatgcgtggtggcaacaaatatagctgaaaca
tcgttaaccgtggatggcattgtattcgttgtagactctggttactgtaaattgaaggta
tacaatccgcgtatcggtatggacgctttacaagtgtacccggtatctagagcgaacgct
gatcaaagagcaggaagagcaggacgtaccggtcctggcacttgttacagattgtatacg
cgaagacagtatctcgatgaattactgttaaccggtgttccagagatacagagaaccaac
ttagccaacactgtattgttactaaaatcattaggcgttcaggatttgttagcattccat
ttcatggatcctccgcctcaagataacatactgaactctttgtatcaattatggatctta
ggcgcattagatcacacaggacgcctgacacctttgggacgacaaatggcagaatttcct
ttagatccccctcaatgtcaaatgctaattgttgcttcccagcttggttgcaccgcggat
atactgatcatagtttctatgttatcggtgccctcgatattctatcggccaaaaggtcgg
gaagaagattccgattcggcgagagaaaaatttcaagtaccagaatctgatcatctaacg
tacttgaacgtgtacaatcaatggaaagctaatggctattccagttcatggtgcaacgac
cacttcatacacgccaaggctatgcgtaaagtaagagaagtccgacagcagttggaagaa
attttgaagcaacagaaaatggaagtcgtaagctgcggcaccgactgggacgttgtaagg
aaatgtatttgttccgcgtacttccatcaagcggctcgtttaaaaggaatcggtgaatac
gtgaattgccgtacgggaatgccgtgtcatcttcatccaacctcggcgctgtttggtatg
ggattcacgccggattacgtggtgtatcacgagctcgtaatgaccgccaaagagtacatg
cagtgtgtcactgccgttgatggacactggctagccgaattaggtcctatgttctttagt
gtaaaagaaacgggtagaagcggacgtgcaaaaagacgtcaggcgatgcaacatttgcat
gaaatggagggacaaatgaaggaagccgaggaagaaatgaaagcgcgagcacaagaacag
cttgaacgagaacaagcttccattagaaagcaagaaatattgacaccaggaatccgagaa
cccggaacgcctgctccatatcgcaaaactccaggaagactaggattataa
DBGET
integrated database retrieval system
