Osmia lignaria (orchard mason bee): 117609044
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Entry
117609044 CDS
T09775
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
olg
Osmia lignaria (orchard mason bee)
Pathway
olg04512
ECM-receptor interaction
olg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
olg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117609044
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117609044
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
olg04147
]
117609044
00536 Glycosaminoglycan binding proteins [BR:
olg00536
]
117609044
Exosome [BR:
olg04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117609044
Glycosaminoglycan binding proteins [BR:
olg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117609044
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117609044
NCBI-ProteinID:
XP_034190773
LinkDB
All DBs
Position
Unknown
AA seq
1955 aa
AA seq
DB search
MTRLGLRFVASAVFLAGIVSAQFNHTSWSNDPPPVVPLGRGDIGKPNSTDDEYIAPRWRA
FLSNNEGSEEADRRNLEPYDEGRNYDDGYNRYPDGGEYGQRSGTDGSGGYQRGYGGGDRR
TYSQSHSQSHSQSHSQSQGQGTQDPYNQGPVDPYGRSRGYEDTYGRGAEVEGQRSRDPYG
DGYGENRGSGDAYGREDPYGRGYSQGQGGGYGAAGDSDNYPSSYSAVPIPGRAQPKNCTG
SACCVPKCFAEKGSRGSPGVMGPQGPKGQRGFPGAEGLLGPKGEKGDPGPQGPRGPIGDR
GKMGMPGFPGINGVPGVQGPPGSPGLPGRDGCNGTDGEPGLRGLPGEPGPRGFRGTPGPK
GDKGQPAFAGMFPVGQKGEPGIDGVRGPPGPPGPQGEHGIPGPKGERGPYGGSGIPGPKG
EKGNMGLGFEGVKGDKGQKGEQGPPGSSVPLVPFEGVPPEVTGEKGEPGGKGDKGEMGLD
GQKGEPGLIGDHGIPGYSGGKGEKGLPGAPGIRGRDGFSGPPGPPGRKGDRGYDGLDGIP
GRPGQKGQPGRDGPMGTSGLRGPPGPPGGGKGTPGPPGPKGPQGFPGPIGPRGADGYPGD
PGPRGPIGMTGGPGSQGIPGPEGLPGEKGGKGEPGITGFPGPTGPRGFDGPPGSPGPRGL
QGEKGLSIVGPKGMDGAPGLDGEKGQKGERGYSGPRGFPGDSLDGIPGSPGEPGFPGEPG
TPGKDGAPGFPGAPGEKGDIGGRCQDCLPGLSGLKGDRGLDGIPGLPGPRGPPGERGFPG
EAGADGLPGPIGPPGPPGKDGIPGSAGPQGVPGTPAVVSRSSIKLEKGERGLRGEPGRPG
PPGPQGPPGEKGALGFEGFPGTKGTAGDRGFPGQDGIPGRPGVPGRKGESGISVKGEPGE
AGRLGAPGFKGEPGLYGQKGEPGECPPLTWVKDLKGDRGSQGEKGEPGPPGRDGPSGDKG
LQGFSGPPGPPGQIGPPGPVGPRGLPGPRGDKGDMGPMGFPGEPGREGPRGFPGAPAPKG
DKGEPGISVKGSPGLPGPPGEKGEKGLPGPPGKEGQVGFPGLPGFMGEKGDVGVPGISGL
PGAPGGKGDTGPVGPRGPPGVAGIPGLDGMKGEPGLPGEPGRAGLPGFPGAKGDRGEPGI
DGPKGYPGRRGPPGLQGRPGVEGASGMKGERGEKGSSGFPGLPGMEGRPGPPGLSGDKGD
DGLPGPPGLVGPIGFDGLKGDRGPPGLPGRKGEPGQVSEKGQKGEPGIPGIRGPPGPSGR
DGIDGAKGESGIPGMGRDGLPGPKGEPGIPGRDGLPGLQGQKGDTGVRGFPGLKGDFGPP
GASGEPGTPGIDGLPGERGDIGPPGPPGFPGLDGDMGAPGRPGLNGSKGERGFPGPSGLP
GIAGGPGEKGDRGAPGPTIQVKGEKGEPGIPGLSGAPGEKGDRGLEGLAGYDGEKGDRGA
PGPAGNPGPPGHSGAKGDEGPRGPSGISGLTVKGEKGLPGMPGKHGREGIPGRPGEKGEQ
GLPGLPGYKGDQGPYGPIGPQGEKGDMGPAGTPGLPGRDGRPGLEGMPGLLGEKGDKGDI
GLRGLPGIPGQKGEAGFPGPSGLDGLPGEKGDRGWDGLNGAPGASGEKGDRGYPGPAGLK
GPPGYLGPKGDKGEDCIEPPMGPKGDRGYPGPTGPPGPPGEKGLPGPPGFSGLDGVKGAS
GLPGPPGPAGLPGLPGPVGSPGLPGLQGPVGVPGPAGEPGQPCDVVPDYLTGILLVRHSQ
SQTVPVCEPGHIKLWEGYSLLYTDGDERAHSQDLGYAGSCVRKFSTMPFLFCDVNNVCHY
ASRNDRSYWLSTNSPIPMMPIEETAIEEYISRCVVCEVPANVLAVHSQSLSIPECPQGWT
GLWIGYSFVMHTGAGSQGGGQSLSSPGSCLEDFRATPFIECNGAKGHCHYYANEFSFWMA
SIEDRQQFQRPEKQTLKAGNLRSRISRCQVCIKNT
NT seq
5868 nt
NT seq
+upstream
nt +downstream
nt
atgacccggttgggattgcgattcgtcgcgtccgcagtcttcctagccgggattgtcagt
gcgcaatttaatcacacatcatggtcgaacgatcctccaccggttgttccgctgggacga
ggtgatatcggaaagccaaatagtacagatgacgaatatattgcacctagatggagagct
tttctttcgaacaacgaaggttcagaggaagcagacaggcggaatttagaaccatatgac
gaaggtcgcaattacgatgatgggtacaacagataccccgatggcggtgaatatggtcaa
agatctggaaccgatggttcgggaggatatcaacgaggttatggaggcggagatcgaagg
acctacagccagagccatagccagagccatagccagagccatagccagagccagggacaa
ggcactcaggatccttacaatcaaggacccgttgatccttacggaagatctcgaggttat
gaggacacttacggaagaggagcagaagtagaaggacaacgttctagagatccttatggc
gatggctacggagaaaatcgtggatccggagacgcttacggtcgtgaagatccttatggc
cgaggatactcgcaaggtcaaggaggaggatacggtgcagctggtgactcggacaattat
ccgagtagttattcggctgtgccaattccaggacgagctcaaccaaagaattgcaccgga
tcagcttgctgtgtaccgaaatgttttgcagaaaaaggctcgagaggttcaccgggtgta
atggggccacagggtcccaaaggtcaaagaggatttcctggagcggaaggtctcctagga
ccgaaaggagagaaaggtgatcctggtcctcagggaccacgtgggccaataggtgacaga
ggaaaaatgggtatgcccggattccccggtataaatggtgttcccggagttcaaggtcct
cctggatctcctggtcttcctggtcgtgacggatgcaacggaacagacggtgaacctggt
cttcgtggtcttcctggagaacccggtcctcgtggttttcgaggtactccaggtcctaaa
ggagataaaggtcaaccagcgtttgctgggatgtttcctgttggtcagaaaggagaacca
ggtatcgatggtgtgagaggacctccaggtcctccaggacctcaaggagaacacggaata
ccaggaccaaagggtgaacgtggtccttatggtggatctggaatacctggtccaaaagga
gagaaaggcaacatgggtctcggatttgaaggtgtaaagggtgataaaggtcaaaaggga
gagcaagggcctccgggttcatctgttcctcttgtaccattcgaaggagtgccaccagaa
gttacgggtgaaaaaggagaacctggtggaaaaggggacaagggtgaaatgggacttgac
ggtcaaaaaggagaaccaggtttaattggagatcatggtatacctggctattcaggtggg
aaaggagagaaaggtcttccaggagctcccggtattcgcggtagggatggtttctcagga
cccccaggtccacctggacgtaaaggagatcgaggttacgatggattagacggaattcct
ggtcgtcctggtcagaaaggacaaccgggtcgagatggacctatgggtacttcaggatta
cgaggacctccaggtccaccaggaggcggtaaaggtacgccaggtccaccaggaccaaaa
ggacctcaaggttttccaggtccaattggacctcgtggtgctgatggatatccaggagat
ccaggtccaagaggtcctataggaatgaccggtggtcctggttcacaaggtattcctggt
cccgagggattgccaggagaaaaagggggtaaaggagagcctggaatcactggattccca
ggaccaacaggacctagaggtttcgacggtcctcctggttcgcctggtccacgaggtctt
caaggagagaaagggctgtcgattgtgggccctaaaggaatggatggagcacctggttta
gatggagagaaaggacaaaagggagaacgcggttattcaggaccgcgtggattcccaggg
gactctttggatggaattcctggatcgccaggtgaacctggttttccaggagagccagga
actccaggaaaagacggtgctccaggttttccaggagctccaggtgaaaagggagatatc
ggaggacgttgtcaagattgtttgccaggactatcaggacttaaaggagatcgtggcctc
gatggtattcctggtcttcctggaccacgtggtccaccaggagaacgaggattccccggg
gaagctggtgctgatggactgcctggaccaattggaccaccaggaccaccgggtaaagat
ggtattcctggttcagctggccctcaaggagtaccaggtacgccagcagttgtttcaaga
agttcgattaaactggagaaaggtgagagaggtttacgaggcgaacccggaagacccggt
ccaccgggtccacaaggtcctcctggagagaagggtgcacttggattcgaaggattcccg
ggtaccaagggtacagctggagatcgtggattccctggacaagatggtatacctggtaga
ccaggtgttccaggacgaaaaggagaaagtggtatcagcgtgaaaggagaacctggagaa
gcaggtcgactaggtgcacccggattcaagggtgaacctggtttgtacgggcaaaaagga
gaacctggcgagtgtccaccattgacatgggttaaggatctaaaaggtgatagaggatct
cagggtgaaaaaggagaacccggacctccgggaagagatggaccaagtggtgacaaaggt
ttgcaaggtttttcgggaccacctggtcctcctggacaaatcggtccacctggaccagtt
gggccacgaggattaccagggccacgaggtgataaaggtgatatgggacctatgggtttc
cctggagagcctggacgtgaaggaccaagaggattccctggtgctccagctccaaaagga
gacaagggtgaacctggaatatcagttaagggtagtcctggtttgcctgggccaccagga
gagaaaggagaaaaaggtttaccaggaccaccaggaaaagaaggacaagtcggcttccct
ggtctgccaggatttatgggagaaaagggtgacgttggagttccaggaataagtggttta
cctggtgcacctggagggaagggtgatactggaccagttggacctcgaggtcctcctggt
gtagcgggaattcctggtctagatggaatgaaaggtgaacctggattaccgggagaacca
ggcagagccggtcttccaggattccctggtgcgaaaggagatcgaggcgaaccaggtatc
gatggaccaaaaggttatcctggtagacgtggcccacctggcttacaaggtagacctggt
gtagaaggtgcatctggaatgaagggagaacgaggtgagaaaggttcatctggtttccct
ggattacctggcatggaaggaagacctggaccacctggtttatctggagataaaggagat
gatggccttcctggccctcctggtttagtgggtccaattggattcgacggacttaaaggt
gatcgaggtccaccaggtttgccaggtcgtaaaggtgaaccgggtcaagtgtcggagaaa
ggtcaaaagggtgagccaggtataccaggaatccgcggtcctccgggtccttctggtaga
gatggtattgatggtgcaaaaggagaatctggaatacctggtatgggtcgtgatggatta
ccaggaccaaagggagaacctggtataccgggtcgtgatggtttgccaggacttcaagga
caaaaaggtgatacaggagttagaggattccctggacttaaaggagatttcggaccacca
ggtgcatcaggtgaaccaggaacacctggaatcgatggtttgcctggcgaacgtggtgat
attggtccacctggacctcctggtttccctggtctagacggtgatatgggagctccaggg
cgtcctggacttaacggttccaaaggagagcgtggtttcccaggtccttctggtcttccg
ggtattgctggtggacctggagaaaagggtgaccgtggagcacctggcccaacaattcag
gtcaaaggtgaaaaaggtgaaccaggtattcccggactatcaggtgcacctggagagaaa
ggtgatcgtggtttagaaggtcttgctggatacgatggtgaaaagggagaccgaggtgca
cctggtccagctggaaacccaggaccaccaggacatagtggtgctaaaggtgacgaagga
ccacgcggaccctcaggcatttcaggattaactgtcaaaggtgaaaaaggtttaccaggt
atgccaggaaaacatggacgagagggaataccagggcgaccaggagaaaaaggagagcaa
ggcttgccaggtctgccagggtacaaaggagatcagggtccttatggtcccattggccca
cagggtgaaaaaggtgatatgggccctgcgggtactccgggtctaccaggtcgtgacgga
cgtccaggtcttgaaggaatgccaggtttactgggtgaaaaaggtgataaaggagacatt
ggtttacgaggattgcccggtattccaggacaaaagggagaagcaggatttccaggacct
agcggattggacggacttcccggagaaaagggtgacagaggctgggacggtctgaatggt
gctcctggagcttctggagagaaaggtgacagaggatatcctggtccagcagggttgaag
ggtccccctggttatctaggtccaaaaggtgacaagggtgaagattgtatcgaacctccc
atgggaccgaaaggagatcgtggataccctggacctacgggtccaccagggccaccagga
gaaaagggacttccgggaccaccaggattctcaggattggatggagtgaagggtgcatcc
gggcttccaggacctccaggcccagctggtttgccaggtctaccaggccctgtcggttcg
cctggtttgccaggtttgcaagggcctgtgggagttccaggtcctgcaggtgaacctgga
caaccgtgtgatgtggtccctgactatcttactggtatcttgttggtcagacacagtcaa
agtcaaacggttccagtttgcgagccaggacacatcaaactctgggaaggatacagttta
ttgtacacagatggcgatgaaagagcgcattcgcaagatttaggttacgctggttcctgc
gtaagaaagttctcgactatgccattcctcttttgcgacgtcaacaacgtgtgccattat
gccagtcgcaacgatcgttcttactggctgtcgaccaatagtccaattcccatgatgcct
attgaggagacggcgatagaagaatacatctccaggtgtgtggtatgcgaagttccagcg
aatgtgttagcagtgcacagtcagtcattgagcattccagagtgtccacaaggatggacc
ggtctttggatcggatacagttttgtcatgcacactggtgccggctcccaaggtggagga
cagtcactgtctagtcctggatcctgtctggaggacttccgtgccacgccgttcatcgag
tgcaacggcgccaaaggacactgccattattacgcgaacgaattcagtttttggatggcc
agcatcgaagataggcaacaattccaaaggcccgaaaaacagaccctgaaggcaggtaac
ctcaggtcccgaataagtcgctgccaagtgtgtataaagaacacgtaa
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integrated database retrieval system
