Osmia lignaria (orchard mason bee): 117609248
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Entry
117609248 CDS
T09775
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
olg
Osmia lignaria (orchard mason bee)
Pathway
olg03020
RNA polymerase
olg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
olg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117609248
09124 Replication and repair
03420 Nucleotide excision repair
117609248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
olg03021
]
117609248
03400 DNA repair and recombination proteins [BR:
olg03400
]
117609248
Enzymes [BR:
olg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117609248
Transcription machinery [BR:
olg03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117609248
DNA repair and recombination proteins [BR:
olg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117609248
BRITE hierarchy
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
117609248
NCBI-ProteinID:
XP_034191226
LinkDB
All DBs
Position
Unknown
AA seq
1904 aa
AA seq
DB search
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK
IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQDQQNADRKPGHGGCGRYQ
PNLQRSGLDVTAEWKHVNEDSQEKKIALTAERAWEILKHITDEESFILGMDPKFARPDWM
VVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKLSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAILRE
IFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDKCIIVAGDDR
LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNK
FQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGTAGMFFGSVAT
PSMSPQMTPWMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSPQPG
SPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTP
ASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPT
YSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSP
TSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggctacgtccgactccaaagcgcctttgcgaactgtaaaaagggtccaatttggtatt
ctttcacctgatgaaatacgtcggatgtcagtcacagatggaggcatacgatttccagaa
actatggaaggtggtcgcccgaaactgggtggacttatggatcctagacaaggtgtcata
gatagaaattctagatgccaaacatgtgcaggaaatatgacagaatgtccaggacatttt
ggccatatagatttggccaagccagtttttcatgttggttttataacaaaaacaataaaa
atcttaagatgcgtgtgtttttattgttcaaaacttcttgtcagtccacacaatccaaaa
attaaggaaattgtaatgaaaactaaaggtcaaccacgtaaacgtcttacatttgtttat
gatttatgtaaaagtaaaaatatttgtgagggtggtgatgaaatggatattaataaagag
aaccaggatcagcagaatgcagatagaaaacctgggcatggtggttgtggtagatatcaa
ccaaatctacagagatcaggtttagatgttactgcagaatggaaacatgtaaacgaggat
tcccaagaaaagaagatagcgcttaccgcagaaagagcatgggaaattttaaaacacatt
acagacgaagaatcgtttatccttggtatggacccaaaatttgcacgaccagattggatg
gtggtcacagtcttgcctgtcccacctctctcagttaggccagcagttattatgtatggt
tctgccaaaaatcaagatgacttgacacacaaactggcagatattataaaagcaaacaat
gaattgatccgaaacgaacaagctggagctgcagcgcatgtaatatcagaaaatataaaa
atgttgcaatttcatgtagcaaccttggtcgacaacgatatgcctggcatgcccagagcg
atgcaaaagtcaggcaaacccttaaaagctataaaagcaagactgaaaggaaaagaaggc
agaataagaggaaatttgatgggtaaacgtgttgacttctcagctcgtactgtcatcaca
cccgatcccaatttgcgaatcgatcaagtaggtgtacctcgaagcattgcccaaaattta
acatttcctgaaattgtgacaccatttaatattgataaaatgcaagaactcgttagacgt
ggaaattcacagtatccaggagccaagtacattgtcagagacaatggagaaaggatagat
ttaagatttcatccgaaaccgtctgatttgcatttacaatgtggttatagagtggaacgt
cacattcgtgatggcgatttagtcattttcaatcgtcaacctactctccacaaaatgagt
atgatgggtcacagagtaaaagttctaccgtggagtacattccgtatgaatcttagttgt
acgtcaccttataacgccgattttgacggagatgaaatgaatttgcacgtacctcaatcg
atggagactcgagcggaagtagaaaacattcacgtgacaccacgacaaatcatcacaccg
caagctaataaaccagttatgggtattgtacaggatacacttaccgctgtaagaaaaatg
acgaaaagagatgtctttattgaaaaagaacaaatgatgaatattcttatgttcttgccc
agctgggatggaaaaatgcctcaaccgtgtatattaaaaccaaagcctttgtggaccggt
aaacaaattttctctctgattataccaggcaatgtaaatatgataagaactcacagtact
catcccgacgaagaagatgacggtccatataaatggatatcacctggtgacactaaagtt
atggtagaacatggagagctcgttatggggattctttgtaagaaaactttgggtacatct
gctggatctctgcttcacatttgtatgttggagctaggacacgaggtctgtgggcgattt
tatgggaacatccaaacagtgatcaacaactggttgctattggaaggtcattccattggt
attggtgataccatcgccgatccacagacctacttagaaattcagaaagcaattaaaaaa
gctaaagaggacgtgatagaagttattcaaaaggctcataatatggagctggaacccacc
cctggaaatacgttgaggcaaactttcgaaaatcaagtaaacagaattttgaacgacgct
cgtgacaagactggtggttctgctaagaaatctttaactgagtacaataatctaaaggct
atggtagtatcaggatcaaagggatctaatattaatatctctcaagttattgcttgtgta
ggtcaacaaaacgttgagggtaaacgaattcctttcggttttcgtaagagaactttaccg
catttcatcaaagatgattacggtcctgaatccagaggattcgttgagaactcgtatctt
gctggtctaactccgtctgaattttattttcacgctatgggaggtcgtgaaggtctcatc
gatactgccgtgaaaactgcagaaactggatacattcaacgccgtctgataaaagctatg
gaatctgtaatggttcattacgatgggacagttaggaactctgtaggacaacttattcag
ttgcgttatggcgaggatggtttatgcggagaaaccgtcgagttccagaatctacctacc
attaaattaagcaataaggcatttgagaagaagttcaaatttgatcccaccaacgaacga
tatcttcgtcgcattttcaatgaagatatcgttagagaaatgatgggatccggggaagta
atatctgaattggaaagagaatgggaacaattgaacaaggatcgtgctatactcagagag
atatttcccagcggagaatcaaaagttgtattgccttgcaatcttcaaagaatgatttgg
aatgtgcaaaagatattccacatcaacaaacgagcaccaacagatctcagtcctatgaga
gtcatccaaggtgttaaagatcttttggataaatgtattattgtggctggtgacgataga
ctcagcaaacaggctaatgaaaacgctacattattattccaatgtttagtaagatctact
ttatgtacaaagtgtgtttctgaagaattcaggttatccagtgaagcttttgaatggctt
attggagaaattgaaactaggttccagcaagcccaggtatcgccaggtgaaatggtcggt
gctttagctgctcagtctcttggcgagccagcaacccagatgacgctgaatactttccac
tttgctggtgtatcgtcgaagaacgtaactcttggtgtacccaggctaaaggagattata
aacatcagcaagaaaccaaaggctccgtcgttaacggtattcctaaccggagcagcagca
agagatgctgagaaagcaaagaatgtactttgccgattggaacacacaacattgaggaaa
gttacagcgaatactgctatttactacgatccagatccacagaatactgtgatagcagag
gatcaagaatttgtgaacgtttattatgaaatgcctgatttcgatccaaccaaaatatcc
ccgtggctgcttcgtatcgagttagaccgaaagagaatgactgataaaaaattgacaatg
gaacaaatagcggaaaagattaacgctggctttggggatgatctgaactgcattttcaac
gacgataacgctgagaaattagttttacgaattaggataatgaacagcgatgataacaag
ttccaagataccgaagaagaaactgtagataaaatggaggacgacatgttccttcggtgt
attgaggcaaatatgctcagtgacatgacattacagggtatcgaggcaataggaaaagtt
tatatgcatttaccgcaaaccgattccaagaaacgtatcgtcatcactgaaactggtgaa
tttaaagcaatagctgaatggttattggaaacggacgggacaagtttaatgaaagtattg
agcgagagagatgtcgatcctgttaggacattcagtaatgatatctgtgaaatattccaa
gtccttggtatagaagctgtcaggaagtcggtagaaaaagaaatgaacgctgttttgcaa
ttttatggtctttatgtaaattatcgtcatctcgctttgctttgcgacgttatgacggcc
aaaggtcacttgatggctattactcgtcacggaataaacagacaggacactggtgcactt
atgagatgctcttttgaagaaacagtggatgttttattggatgctgcatctcatgcagag
gttgatccaatgagaggagtatctgaaaacattattatgggacaacttccacgaatagga
acaggatgtttcgatttgctattagatgctgagaaatgtaaagctggtattgaaatacca
atggcggtaggtgctggtgtaatgggaacagccggaatgttctttggcagtgttgctaca
ccaagcatgagtcctcaaatgaccccttggatgggtgctaccccgggttacggagcgtca
agcatgtctcctgcactgggaagtggtatgacaccaggtggtgcatgcttctcaccatca
ggagcgtcggatgcttcaggactttcacctgcttattccgcgtattcgccacaacctgga
agtcctggcagtccaggacccagcatgagtccatacccaatgtcaccggcaggaggtgct
tcgcctagttattcgcctacatcgcctgcctatttaccaacttcaccgagtattacacca
tcgagtcctaactactcgcctaccagtccaacgtactcacccaccagtccaaactattcg
ccaacgagtccaagttattctccaacaagtccaagttactcgccgacatcaccgagttat
tcgccaacgagtccgagttactcgccaacgtcgccgagttattcaccaacgagcccttcg
tactcgccaacgtcaccgagctactcgccaacgagtccgagctactcgccaacgtcaccg
agttattcaccaacgagtccatcgtattcgccaacgtcgccaagctactcgccaacgtca
ccgagttactcgccaacgagtccttcgtactcgccaacgtcgccgagctactcgcccacg
agtccgagttactctccaacgagtccaagctattcgcctagttcaccaaattacacgcca
gcatcgccgtcttattctccaacaagtccaagttactcgccgagttcgccacaatattca
cctgccagtccaagttactcaccgagcagtccaaaatattcgccaacgagtccgagttat
tcaccgacgtcaccatcgtttgctggaacctcgccacagtacacgccagcgagtccaact
tactctccaacgagcccaacctactcgccaacgagtccatcgtactctcctagttcgcca
caacacacagcgtcagggagtacaaggtactcgccgagtagtccaaattactcgcccact
agcccgacgtattcgcctacgagtcctcagtactcgccatcgagcaccaagtactcgcct
accagcccaacgtacacaccaacgagtccgagttattcgccgacgagtccaacgtactct
ccaccggtaccgggctactcgccaacgagtcccacgtattctccagcatctccagcctac
gagacagacgactaa
DBGET
integrated database retrieval system
