Osmia lignaria (orchard mason bee): 117610722
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Entry
117610722 CDS
T09775
Name
(RefSeq) uncharacterized protein LOC117610722
KO
K03679
exosome complex component RRP4
Organism
olg
Osmia lignaria (orchard mason bee)
Pathway
olg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117610722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olg03019
]
117610722
Messenger RNA biogenesis [BR:
olg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117610722
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
117610722
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
Isochorismatase
KH_6
EF-hand_1
ECR1_N
EF-hand_7
EF-hand_6
EF-hand_5
EF-hand_8
EH
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
117610722
NCBI-ProteinID:
XP_034194334
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
MEECPPINVRLAVNRVDLNLIKNEDKQPRIYTPGEEIASQPDFLRGHGTYVDDENTLRAS
VAGILEKVNKLISVKPLKARYQGEIGDVIVGRITEVQQRRWKVDTNSKLDSVLLLSSVNL
PGGELRRRSAEDEQTMRRYLQEGDLICAEVQSTFVDGSLSLHTRVLKYGKLSQGIMLKVS
PALIKRKKTHFHNLENGASLILGTNGYVWIGASEQDTDKSEGGFTQDLSRIPQTIREVCA
RLRNCILILAQCNMQLTDTSVTYAYEESMKYKVNDLLEPEVMQRNMDACFTAFDKDADGY
LSLTEFQLICRALFRNDRGKIYDLEEDQLKEIYSIFDLNGDGMINREEFEVCWNRWIKIC
TRPKSAFLIVDVQNDFITGSLNIKQCAAQHDGSEVIEPTNRLLETVQFDAVFYSLDWHPV
DHVSFIDNLHLREVDSSSGISKEAAQVYDTVTFRGPPLLKQRLWPRHCIQDSWGAELHKD
LKIVDNAIKIYKGTNPEVDSYSVFWDNKKMMETSLSSQLQEKGATDIYICGLAYDVCVGA
TAVDALTSGYRTILIDDCSRGVDLVDIEKTKATVIANNGVIVNSSQVKAMVEGRDRRPEL
GYKLALEIKRKLNFVEDDDK
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatgtccgcctattaatgtacgtttagcagtaaatagagttgatttaaattta
ataaagaatgaagataaacaacctcggatatacacaccgggagaagaaattgctagccaa
cctgactttttgaggggtcatggaacgtacgtagacgatgaaaacacattacgtgcatct
gtggctggtattttagaaaaagtaaataaactcatttcggttaaaccattgaaagcacgt
taccaaggcgaaataggagacgtaattgttggtcgtataactgaagttcaacaaagacga
tggaaagttgatacaaattccaaacttgactctgtgttactactttctagtgttaattta
cccggtggagaattgaggagaagatctgcagaagatgagcaaactatgagaagatatctc
caagaaggagatttaatttgtgcagaagtacaaagtacttttgtagatggttccctttca
ttgcatactagagttttgaaatatggtaaactatctcagggcataatgttaaaagtttca
ccagctctgataaaacggaaaaagactcattttcataatttggaaaatggagcaagttta
atattaggaacgaatggttatgtgtggattggagctagcgaacaagacactgataaatca
gagggtggtttcacacaagatttatcaagaattccacaaacaattcgtgaagtttgcgca
aggctgcgtaattgcattttgattttagcacaatgtaatatgcagctcacagatacatct
gttacatatgcttatgaggagtctatgaagtataaagtaaatgacttactggaacctgag
gtaatgcaaagaaacatggatgcctgttttactgcatttgataaagatgcagatggatat
ttatctcttacagaatttcaactgatttgtcgcgcactatttcgtaacgatcgtggaaaa
atttacgatcttgaagaagatcaactgaaggaaatatattctatatttgatttgaatgga
gatggaatgatcaacagagaagaatttgaggtatgctggaatcgttggattaaaatatgc
actcgtccgaaaagtgcgtttttaattgtagatgtacaaaatgatttcataaccggttct
ttaaacattaaacagtgtgctgcacaacatgatggctcagaagtaattgaaccaacaaat
cgtttattagaaactgtacaatttgatgcagttttctattctcttgattggcatcctgta
gatcatgtatctttcattgataatttacatctaagagaagttgattctagtagtggaatt
tcaaaggaagcagcacaagtttatgatacagttacatttagaggaccacctctgttaaaa
cagcgcctttggccacgtcattgtattcaggactcttggggtgcagaacttcataaagat
ttaaaaattgtcgataacgcaattaaaatatataaaggaacgaatccagaagttgattcg
tattctgtcttttgggataataagaaaatgatggaaactagtttgtcttcgcaattacaa
gagaaaggagcaacggatatatacatttgtggattagcttatgatgtttgtgttggagct
actgcagttgatgcactcacaagcggttatcgaactattctcattgacgactgtagtcgg
ggagtagatcttgttgatattgaaaaaactaaagctactgtcatagctaataatggtgta
attgtaaattcaagtcaagtaaaagcgatggttgaaggaagggatcgccgtccagaacta
ggatataaattagccttggaaattaaacgaaaattaaattttgtagaagatgatgataag
taa
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