Osmia lignaria (orchard mason bee): 117610965
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Entry
117610965 CDS
T09775
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
olg
Osmia lignaria (orchard mason bee)
Brite
KEGG Orthology (KO) [BR:
olg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
olg03016
]
117610965
Enzymes [BR:
olg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
117610965
Transfer RNA biogenesis [BR:
olg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117610965
Prokaryotic type
tRNA splicing ligases
117610965
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
117610965
NCBI-ProteinID:
XP_034194717
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRKYQEELNYLEKISDVCWRIKKGFQPNMKVEGVFYVNDTLERLMFEELRNACRPGTV
GGFLPGMKQIANVAALPGIVWRSVGLPDVHSGYGFAIGNMAAFDMNDPKSIVSPGGVGFD
INCGVRLLRTNLFEEDVTPVKEQLAQSMFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADSSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYD
KWAACKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SKEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFQMSPDDLDMHVIYDVSHNIAKIE
EHMVEGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
KETFGSTCHGAGRALSRAKSRRNLDYTDVLEKLERQGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtagtcaggaagtatcaggaagaattaaattatttagagaaaatatctgatgtgtgt
tggagaataaagaaaggttttcagcctaatatgaaggttgaaggtgtattttatgtaaat
gatacattagaacgtttaatgtttgaagaactacgtaatgcatgtaggccaggtacagta
ggtggatttctcccaggtatgaaacaaattgctaatgtagctgctcttcctggaattgtt
tggagatcagttgggttgcctgatgttcattctggatatggttttgccattggtaatatg
gcagcatttgacatgaatgacccaaaatcaatagtatcacctggtggagtaggttttgat
ataaattgtggtgttcgtttgttgagaactaatttatttgaagaggatgttacaccagtg
aaagaacaattggctcaaagtatgtttgatcatattcctgttggtgttgggtcaaaagga
attattcctatgaatgcacatgatttggaagaagcattagaaatggggatggactggtct
cttagagaaggctatatctgggctgaggacaaggagcactgtgaggagtatggtaggatg
cttaatgcagattcttcaaaggtatcaatgagagccaaaaaacgtggtcttccacagtta
ggaacattaggagcaggaaatcattatgctgaaattcaagttgtagaagaaatctatgat
aagtgggctgcttgcaaaatgggtatcgaagagaagggtcaaatttgtgttatgattcat
tctggtagtagaggatttgggcatcaagttgcaactgatgcacttgttcagatggaaaaa
gctatgaaaagagataatattgaaactaatgataggcagttagcttgtgctcatataaaa
tctaaagaaggtcaagactatctaaaatcaatggcagcagcagcaaattttgcatgggtt
aacagaagttctatgacgtttctcagtcgtcaagcatttgcgaaacagttccaaatgtct
cccgatgatttagatatgcatgttatatacgatgtttctcataatatcgcgaagatagag
gaacatatggtagagggtaaacagaaaacgcttctagtacacagaaagggatctacaaga
gcatttccacctcatcatcctttgattcccgttgattatcaattaacgggtcaaccagtt
ctaatcggcggtactatgggaacttgcagctacgttcttaccggtaccgaacagggtatg
aaagagacatttggatcaacgtgtcatggagctgggcgagctttgtctagagctaaatca
cgtaggaatttggattacacggacgtactagaaaaattagagcgacaaggaatatcaatt
cgggttgcttcgcctaaattagtgatggaagaagcacccgagtcttataaaaatgtaacc
gacgttgtaaatacatgtcacgcggccggtatctctaaaaaatgtataaaattacgacca
atcgcggttatcaaaggataa
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