Olivibacter sp. LS-1: FKG96_12095
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Entry
FKG96_12095 CDS
T06195
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oli
Olivibacter sp. LS-1
Pathway
oli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FKG96_12095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oli03019
]
FKG96_12095
03400 DNA repair and recombination proteins [BR:
oli03400
]
FKG96_12095
Enzymes [BR:
oli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FKG96_12095
Messenger RNA biogenesis [BR:
oli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FKG96_12095
DNA repair and recombination proteins [BR:
oli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FKG96_12095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QEL01516
UniProt:
A0A5C0ZHX6
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All DBs
Position
3023823..3025754
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AA seq
643 aa
AA seq
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MFGALNSLNAMSIHEILERYWGYSRFRPLQEEVINHVLAGHDALALMPTGGGKSLCFQVP
ALAMKGICIVVTPLIALMKDQVENLKARNIKAVAIFAGMTKREVDIALDNCVYGDIKFLY
LSPERLMNELVKERLRYMPVNLFAIDEAHCISQWGYDFRPPYLHLSELRELHPQVPFLAL
TATATPKVVNDIQEKLKFRKTTDQAVFVKSFSRENLAYMVIAENHKTGRLVKIIKKIKGS
GIVYVRNRRETQEITRFLLMENIKADFYHAGLSTPERSKKQEAWKQNQTQVIVATNAFGM
GIDKPDVRFVIHMDIPDTLEAYFQEAGRAGRDGKKAYAVLLYNEEDKERLIRNFELSFPT
TKEITQIYYHLGNYFQLAYGAGQYLCFDFDIGTFCKRYQLEPLKVISALKFLERDEWLAV
TENVYLPSRFRFGVGSQDLYSFQVAHANLDGFIKVMLRAYGGAFDYYVSFREADLARKAG
LSLHETLNHLKQLEQYQIISYLSQTDKPQIQFLQPRSDSQHLHIDKKHIDERKKIGEEQL
QSVLNFLQLDACRSQQLLAYFGEKNMELCGICDYCLKRQKKAKEEEIEDLIVAEIIDLLS
TNHLTLDALVDGLKTGDESDRITCIRNLVDGGKIKFNSGKYYL
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtttggagcgctaaatagcttaaacgctatgtctatacacgaaattctagaacggtat
tggggttattcgcgttttagacctcttcaggaagaggttataaaccatgttttggctggc
catgatgccttagcgttgatgcctacaggcggaggtaagtcgctctgctttcaagttcct
gcactggcaatgaaagggatttgcattgttgtaactcctttgatagccttaatgaaagat
caagtcgagaatttaaaagcaagaaacataaaagcggtagcaatatttgcgggtatgacc
aaacgtgaagtagatattgcattggacaactgcgtgtatggagatataaaatttttatac
ctgtcgcctgaacgcctaatgaacgagctcgtgaaagaacggctacggtatatgcctgtc
aatttattcgccattgatgaggctcattgtatttcacaatggggatatgattttagaccc
ccttatcttcatttatctgaactacgtgagctacatccacaggtgccgtttttagcatta
acggctactgccacacctaaagtagtaaatgacatccaggagaaacttaaatttagaaaa
acgaccgaccaagccgtattcgtcaaaagtttctcacgggaaaatttggcctatatggtg
attgctgaaaaccataagaccggccgcttagtcaaaatcataaaaaaaataaaaggaagt
ggtatcgtttatgtccgaaacagaagggaaacgcaggaaattacccgtttcctgttgatg
gaaaacataaaagccgatttttatcacgccgggttgtcgaccccggaacgatcgaaaaag
caagaggcatggaaacaaaaccagacacaggtaattgtagcaaccaatgcttttggtatg
ggtattgacaaacctgatgttcgtttcgtaatccatatggatattccggatacattggaa
gcttattttcaggaggctgggcgagccggacgggatggaaagaaagcctacgcggtgttg
ttgtataatgaagaagacaaggagcgactaataagaaattttgagttaagctttcccaca
accaaggaaatcacccaaatttattatcacttgggaaattattttcaattggcgtatggt
gcgggacaatatctgtgctttgattttgatataggcactttttgcaaaaggtaccagtta
gaacctttaaaagtaattagtgcgctgaagtttttggaacgcgatgaatggctcgcagta
acagaaaatgtatacttaccttcccggtttcgcttcggagtgggatcgcaagatctatac
agttttcaagtagcccatgccaacctggatggatttatcaaagtcatgttacgtgcttat
ggcggggcctttgattattatgtttcattccgtgaggcggacttagcccgtaaagcggga
ctctcactccatgagacgcttaaccatttaaagcagctggaacagtatcagattatcagt
tatttatcgcagacagataaaccacagatccagttcttgcaaccaagaagcgattcacag
catttacatattgacaaaaagcacattgatgaacgaaagaaaataggcgaggagcaattg
cagtctgtactcaactttttacagcttgatgcttgccgatcacaacaactgttagcttat
ttcggagagaaaaacatggagctttgtgggatatgcgattattgcctgaagaggcagaag
aaagcaaaggaagaagaaatagaagacctaatcgttgccgagatcatagacctgctatca
actaatcatttgaccttagatgctttggtcgatggattgaaaacgggagatgaaagcgat
cgaatcacctgtatccgtaatttagttgatggcggaaaaataaaatttaatagcggtaag
tattatctctaa
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