Olivibacter sp. LS-1: FKG96_22780
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Entry
FKG96_22780 CDS
T06195
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
oli
Olivibacter sp. LS-1
Brite
KEGG Orthology (KO) [BR:
oli00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oli03016
]
FKG96_22780
Enzymes [BR:
oli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FKG96_22780
Transfer RNA biogenesis [BR:
oli03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FKG96_22780
Prokaryotic type
tRNA splicing ligases
FKG96_22780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEL03536
LinkDB
All DBs
Position
complement(5476459..5477913)
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AA seq
484 aa
AA seq
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MEKEKISNNELKALGINAVEVLVNFSRVANGLLKHNVMNKPEILANLEALIDDPMPYTLK
KGGKFKNLAEDVIALRKEGKFVKQERSNFKLKEEIVDFPVWGLEQIEVGALSQMRTAVQL
PIAVAGALMPDAHQGYGLPIGGVLATTANTIIPFAVGVDIACRMCLSIFDLPAETLDTET
DKLKNLLVDHTYFGMGCTTKSYFDSSLFDSKTWGETKIIRSLKDKAYAQLGTSGTGNHFV
EWGELTLGEGALNDIPAGKYLALLSHSGSRGFGGAIADHYSRIAMTKTKLPGEAKHLAWL
DLDKDEGQEYWIAMNLAGEYASANHHEIHNKIARALGLRPIMMIENHHNFAWKEQLADGT
EVMVHRKGATPAGEGVLGIIPGSMSTPGFLVRGKGHAPSINSASHGAGRAMSRSAAFKTL
DRAVVAADLVDKRITLLGSDLDEAPMAYKNIHAVMAAQHNLVDVLAKFEPRIVRMADARE
KPED
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaggaaaagataagcaacaacgagttaaaggcattagggatcaatgctgtggaa
gtattagtcaattttagccgcgtagccaatggtttgttaaagcataacgtaatgaataaa
cccgaaatactggctaatctagaagctttaattgatgatcctatgccatatacattaaag
aaaggtggtaaattcaaaaacctggcagaagatgtgattgctttgcgaaaagagggtaag
tttgttaaacaagaacgtagcaactttaaactgaaagaagaaatagttgacttcccggta
tggggcttggaacagattgaagtaggagccttatcacaaatgcggacagcggtacaatta
ccgattgcggtcgccggtgccttaatgccggatgctcatcaaggttatgggcttcccatt
ggcggagtgttggccactacggccaacacgattattccatttgctgtgggtgtcgatatt
gcatgccgtatgtgtttaagtatatttgatctacctgctgagacactcgataccgaaacc
gataaattaaagaatctgttagttgatcacacctattttggtatgggctgtactaccaaa
tcatattttgacagctccttattcgatagtaaaacctggggagagaccaagataatccgc
agtttaaaggataaggcgtacgctcaattaggaaccagtggaaccggtaaccattttgta
gaatggggtgaactaaccttaggcgaaggtgccttgaatgatataccggcgggtaagtat
ttagcgctgctttcgcactccggctctcggggctttggaggtgcaattgcagatcattac
agtaggatagcgatgactaaaaccaaacttccgggcgaggctaaacatttagcatggctt
gatctggataaagacgaaggacaggaatactggatagccatgaacttggcaggggaatat
gccagtgccaaccatcatgaaatccataacaaaatagcacgagccttaggacttagaccc
atcatgatgatcgagaaccatcacaactttgcctggaaagagcagctggctgatggtact
gaagtaatggtacaccgtaaaggtgctacgccggcaggtgagggtgtgttgggaattatt
ccaggtagtatgagtacgcccggctttttagtacgcggtaaaggtcatgcgccaagcatc
aactcggccagtcacggcgcgggcagggccatgagtcgtagcgcagctttcaaaacgttg
gatagagcagtcgttgccgctgacttagttgacaaacgcatcaccttgctcggaagcgat
ctcgacgaagcacctatggcatataagaatatccatgcggtaatggccgctcaacataat
ctggttgacgtgttggctaaatttgagccaagaatagtcagaatggcagatgcacgcgag
aaaccggaggattaa
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