Olleya sp. Bg11-27: CW732_04945
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Entry
CW732_04945 CDS
T05214
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
oll
Olleya sp. Bg11-27
Pathway
oll03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oll00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CW732_04945 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oll03400
]
CW732_04945 (mfd)
Enzymes [BR:
oll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CW732_04945 (mfd)
DNA repair and recombination proteins [BR:
oll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CW732_04945 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
NDUF_C2
Motif
Other DBs
NCBI-ProteinID:
AUC75055
UniProt:
A0A2K8WWK3
LinkDB
All DBs
Position
complement(1143931..1147269)
Genome browser
AA seq
1112 aa
AA seq
DB search
MSKTVISQTYLKSLQLQKLHTAIAQTQSKTHLKGLVGSSLSYAITQTFKNSDLPFLLIFN
DKEEAAFYLNDLEQLVNKTDVLFYPGSYRRPYQIEETDNANVLLRSEVLNRINSRKKPAI
IVTYPDALFEKVVTRKELERNTLKITVNDSLSIDFVNEILFEYKFKRVDFVTEPGEFSVR
GGIVDVFSFSHDEPYRIEFFGDEVDSIRTFDVETQLSTEQIKKISVIPNVANKLMDESRQ
SFLKYIAQKTVVFGKNFDLTFDRIDDFFDKAIAAFVNLNPDIKHAKPSELFCNAAELKKQ
LLDFTLVEFGTDTVFNTTETIQHNTSPQPAFNKQFNLLIDNLNSNHNNDYTNYIACVSEQ
QAKRFHDIFDDVEQDVHYQTITLSLYQGFVDHDNKLVVYTDHQIFERYHKFHVKNGYAKK
QAITLKDLTNLDIGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLVYGERDVLYLSIHSL
HKITKFNGKDGKPPKVYKLGSKAWKALKEKTKSRVKHVAFNLIKLYAKRKLEKGYQYKQD
SYLQHELEASFIYEDTPDQITATADIKVDMESERPMDRLICGDVGFGKTEVAIRAAFKAV
DNGKQVAILVPTTILAFQHHKTFSERLKDFPVTVDYVNRFRTAKQKKETLEKLEKGHVDI
IIGTHQLASKNVKFKDLGLLIVDEEQKFGVAVKEKLKTLKDNVDVLTLTATPIPRTLQFS
LMAARDLSVITTPPPNRYPIESNVIRFTEEAIRDAVSYEIERGGQIFFIHNRIENIKEVA
GMIQRLVPDAKIGIGHGQLEGKKLESLMLGFMDGDFDVLVSTTIIESGLDVPNANTIFIN
NANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTDDARKRIQALEQFTELGSGFNIA
MKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIEELKENEFKDLYNEPLENKEYVK
DITIDTDFELLFPDDYVNNIAERLNLYTQLNNFKTEAELAVFETQLLDRFGELPIQVIDL
INSVRIKWIATKLGMEKVIMKQGKLISYFINDQQSSFYQSPNFTKLLKYVQSHPQACKMK
EKQTRNGLRLLLTFDNIKTVKKALNALNPILE
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaaaccgtaatctcgcagacctatttaaagtctttgcaattgcaaaaacttcat
actgctatagcccaaacccaaagtaagacgcacttaaaaggtttagtaggctcctcccta
tcgtacgctataacacaaacgtttaaaaatagcgaccttccttttttacttatttttaat
gataaagaagaagctgccttttacctcaacgatttagagcaactagtaaataaaacagat
gtcctcttttatccagggagttatcgtagaccttatcaaatagaagaaactgataatgca
aatgtattattacgttctgaggtcttaaaccgtattaactcacgtaaaaaaccagcaata
atagttacttatccggatgcattatttgaaaaagtagtcaccagaaaagaactagaacgc
aataccctgaaaattacagtgaacgatagtttatctatcgattttgttaacgaaattctg
tttgaatacaaatttaaacgtgttgattttgttacagaaccaggagagttttctgtacgt
ggtggaattgtagatgtgttttctttctcacatgacgaaccctatcgtatcgagtttttt
ggagacgaagtagacagtattagaacgtttgatgtcgaaacacaattatcaacagaacag
ataaaaaaaattagcgttattcccaacgttgctaataagctaatggacgagtccaggcaa
agctttttaaaatatattgcacaaaaaactgtcgtttttggtaaaaacttcgatttaact
tttgataggattgatgacttttttgataaagcaattgctgcttttgtaaacctcaaccca
gacataaaacacgcaaaaccatcagagttattctgtaatgctgccgaacttaaaaaacaa
ctgttagactttaccttagtagagtttggtacagataccgtttttaacactaccgaaacc
atacaacacaacacctcgcctcaacctgcttttaacaagcagtttaatttactaatagac
aatttaaacagtaatcacaataacgattacaccaattatattgcttgtgttagcgagcag
caagcaaaacgttttcatgatatttttgacgatgtcgaacaagatgtacattaccaaaca
ataacattgtcattataccaagggtttgtagatcatgacaataaattagtcgtttataca
gatcaccaaatttttgaacgctatcataaatttcatgtaaaaaatggttacgctaaaaag
caagccatcaccttaaaagacttaactaatcttgatattggagactatgtaacacatata
gatcatggaattggaaaatttggtggacttcaaaaaatagatgtcgaaggtaaaaaacaa
gaagctataaaattggtttacggagagcgcgacgtcttatatttaagcatacactctctt
cataaaataactaaatttaatggtaaggatggtaaaccaccaaaagtttataaactaggt
agtaaagcttggaaagctcttaaagaaaaaacaaaatctagagttaagcacgttgcattc
aacttaattaaactatatgctaaacgtaaactagagaaaggatatcaatataaacaggac
agctatttacaacacgaattagaggcttcttttatttatgaagatactcccgaccaaatt
accgcgacagcagacataaaagtcgatatggaaagcgagcgtccaatggatcgcttaatt
tgtggcgatgttggttttggaaaaacagaagttgcgatacgtgccgcatttaaagctgtt
gacaatggaaagcaggttgccattttagtaccgacaaccatattagcgtttcaacatcat
aaaactttttcagaacgtttaaaagactttcctgtaactgtagattatgtcaaccgtttt
agaacagctaaacagaaaaaagaaaccttagaaaagctagaaaaaggacatgtcgatatc
atcataggtacgcatcaactagcaagtaaaaatgtaaaatttaaagacttaggattacta
attgtcgacgaagagcaaaaatttggagttgccgttaaagaaaagctaaaaaccttaaaa
gataatgtagacgttttaacgcttacggctacaccaataccaagaacattacagtttagc
ttaatggcggctagagatttatcggtgataaccacgcctccaccaaatcgttatcctata
gaaagcaatgttatccgatttacagaagaagctattagggatgctgtaagttatgaaata
gaacgtggtggccagatcttttttattcataatcgtatagaaaatattaaagaagttgct
ggtatgatacaacgtttagtaccagatgcaaaaatcggtattggacatgggcaattagaa
ggtaaaaaactagaaagcttaatgctaggctttatggatggtgattttgatgttttagtc
agtactaccattatagaaagtggattagacgtcccaaatgccaatactatttttatcaat
aacgctaataattttggattaagtgacttacaccaaatgcgtggacgtgttggacgaagt
aacaaaaaagcattctgttattttataacaccagaatactcggcaatgaccgacgatgct
agaaaacgtatccaagctttagaacaatttacagaactaggtagtggatttaatattgcc
atgaaagatttagaaatccgtggtgctggagatttattaggaggtgagcaaagcggattt
attaacgaaatcggttttgatacttaccaaaaaatattaaacgaagcgattgaagagctt
aaagaaaacgaatttaaagacctttataacgaacctttagaaaacaaagaatacgttaaa
gatattacaatagacaccgattttgagctgttattccctgacgattatgttaataatatt
gctgagcgtttaaacctttatacacaattaaacaacttcaaaactgaagctgaattagca
gtatttgaaacacaacttttagaccgttttggagaattaccaatccaagttatagactta
attaatagtgtacgcattaaatggattgcaactaaattaggtatggaaaaagtaataatg
aagcaaggtaagcttattagttactttataaatgaccaacaaagtagtttttaccaaagc
cctaattttaccaagcttttaaaatacgtgcagtcccaccctcaggcttgtaaaatgaaa
gaaaaacagactagaaatggcttacgtttattacttacctttgacaacattaaaacagta
aaaaaggccctaaatgccttaaatccaattttggaatag
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