Olleya sp. Bg11-27: CW732_07685
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Entry
CW732_07685 CDS
T05214
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
oll
Olleya sp. Bg11-27
Pathway
oll03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oll00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CW732_07685 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oll03021
]
CW732_07685 (rpoC)
03400 DNA repair and recombination proteins [BR:
oll03400
]
CW732_07685 (rpoC)
Enzymes [BR:
oll01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CW732_07685 (rpoC)
Transcription machinery [BR:
oll03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CW732_07685 (rpoC)
DNA repair and recombination proteins [BR:
oll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CW732_07685 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AUC75557
LinkDB
All DBs
Position
1744204..1748505
Genome browser
AA seq
1433 aa
AA seq
DB search
MAKKQDKNTVQRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYILGLPSKKLDMIIYYERYVVIQAGNAKNEEGEPLKKLDFLTEEEYLNILETLPQDNQY
LDDTDPSKFIAKMGAECLIDLLSRIDLDTLSYELRHKANTETSKQRKTEALKRLQVVEAL
RESNEHRENRPEWMIMKVVPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELRLFECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
REPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACAAFNADFDG
DQMAVHLPLGPEAILECQLLMLASHNILNPANGAPVTVPSQDMVLGLYYMTKHRFSTPEV
KVRGEGLTFYSAEEVNIAYNEKRVELNAGIKVRTMDFNEAGELVPQIIETTVGRVLFNEK
VPAAAGYINEVLTKKSLRDIIGNILKVTSVPETADFLDAIKTLGYYFAFKGGLSFSLGDI
IIPPEKQSMIDAANEKVDGVTGNYNMGLITNNERYNQVIDIWTSTNAELTELSMKRIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGSIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNSEDCGTLRGVEVSALKKND
EVVEKLEARIVGRISLNDVYDPLSEEVLAEAGQLIDEEVAARIEKSPIDSVEVRSPLSCE
AKKGICAQCYGRNLATNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENK
LAVKFDGIAEIEDLKTVKGTNKEGEEEDIVISRTSELKLIDKKTGITLSTNNIPYGSTIL
IKNGDKLKAGDVVCQWDPYNGVIISEFAGKVRYENIEQGITYQVEIDEQTGFQEKVISES
RNKKLIPTLIVEDSKGEAIRSYNLPVGAHIMIDDGEKIKVGKILVKIPRKSSKAGDITGG
LPRVTELFEARNPSNPAVVSAIDGVVSFGKIKRGNREIIVESKLGEIKKYLVKLSSQILV
QENDFIKAGMPLSDGSVTPNDILNIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIIDSGDTIFLEDQLAHKSDFIEENDNIFGMKVVESAGDSSTLKEGQIISAFQL
RDENSILRREDKQLVVGRDAQPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKIDNLEGLKENVIVGHRIPAGTGMRTYENIIVGSKEEFDQMMKAKQEVNYN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaaacaagataagaatacagtacagaggtttaacaaaatctctattggttta
gcatcaccagaatctattttagcagaatctagaggtgaagttttaaaaccagaaactatc
aattatcgtacacataaacctgaacgtgatggtttattctgtgagcgtatttttggtcct
gtaaaggattacgaatgtgcttgtggtaagtataagcgtattagatataagggtattgtt
tgcgaccgttgtggagttgaagttactgaaaagaaagtacgtcgtgatagagtaggacac
attaacttagtggttcctgtggctcatatctggtacttccgttctttaccaaacaaaatt
ggatacattttagggttaccatctaagaaattagatatgatcatttactacgaacgttat
gtagtaattcaagcaggtaatgctaaaaatgaagaaggagagcctttaaaaaaattagac
tttttaactgaagaagagtatctaaatatattagaaacacttcctcaagataatcaatat
ttagatgacacggacccaagcaagtttattgctaagatgggtgctgagtgtttaatcgat
ctattgtctcgcattgatttagatacgctatcatacgagttacgtcataaagcaaataca
gaaacgtctaaacaacgtaaaactgaggctttaaaacgtttacaagttgttgaagcatta
cgtgaatctaatgagcacagagagaatcgtcctgaatggatgatcatgaaagttgtgcca
atcataccaccagaattaagacctttagtgcctttagatggtggacgttttgcaacttca
gatttaaatgacctgtatcgtcgtgtaattatccgaaacaaccgtcttaaaagattagtt
gagataaaagcaccagaagtgattttacgtaatgaaaaacgtatgttacaagaatcagta
gattctttatttgataacacacgtaaatcatcagcagtaaaaacagattctaatagacca
ttaaaatcattatcagattcacttaaaggtaagcaaggacgtttccgtcaaaacttactt
ggtaagcgtgttgattattctgcacgttctgtaattgttgttggaccagaacttagatta
ttcgagtgtggtttacctaaaaatatggcggcagagctttacaaacctttcgtaattaga
aaattgattgaaagaggtattgtaaaaacagttaagtctgcaaagaaaattatagataaa
agagaaccagtagtttgggatattttagagaatgttttaaaaggacatccagtactttta
aatcgtgctcctacattacacagactaggtatacaagcatttcaacctaaattaattgaa
ggtaaagctatccaattacacccattagcatgtgcggcatttaatgccgattttgatggg
gatcaaatggcggttcacttaccattaggacctgaagctattttagaatgccaactttta
atgttagcttctcataatatcttaaatccagcaaacggagctcctgttactgtaccttct
caggatatggtacttggtctatattatatgactaagcacagattttctacaccagaggta
aaagtaagaggagaaggtttaacattctattctgcagaagaagtaaatattgcttataat
gagaagagagttgaattaaatgcagggattaaagttagaacaatggactttaatgaggct
ggagaattagttcctcagattattgaaactactgttggtcgtgttttatttaacgagaaa
gtgccagcagcagcgggttatatcaatgaagtattaactaagaaatctttaagagatatt
attggtaatattttaaaggtaactagtgtacctgaaactgcagatttcttggatgcaatt
aagactttagggtactacttcgcatttaaaggaggattatctttcagtttaggagatatt
atcatcccaccagaaaaacaatcgatgattgatgctgccaacgaaaaagttgatggtgtg
actggtaactataacatgggactaattacaaataacgaacgttataaccaagttattgat
atttggacgtctaccaatgcagaattgactgaattgtcaatgaaacgtattagagaagac
caacaaggatttaactcggtatatatgatgcttgattctggagcccgtggatctaaagaa
cagattcgtcagcttacaggtatgcgtggattaatggctaagcctaaaaaatctacagca
ggaggaggatcaattattgaaaatccaattttatctaactttaaggaaggtctttcaatt
ttagaatactttatatcaactcacggtgcgcgtaaaggacttgccgatacagcacttaaa
acggccgatgcaggttacttaacacgtcgtttagtagatgtatctcaagacgttattgta
aatagcgaagattgtggtacgttaagaggggtagaagtatctgcacttaagaagaatgat
gaagttgttgaaaaattagaagcacgtattgtaggtcgtatttcattaaatgatgtatat
gacccgttaagtgaagaagttttagctgaagctggtcaattaattgacgaagaagttgcc
gctagaatagaaaaatcaccaattgattctgttgaagtacgttcaccattatcttgtgaa
gctaaaaaaggaatctgtgcacaatgttacggtcgtaacttagctaccaataaaatggta
caacgtggtgaagcagttggtgttgtagcagcgcaatctattggagagccaggtacacag
ttaacacttcgtacgttccacgttgggggtattgcaggtaacatttcggaagaaaataag
ttagctgttaagtttgacggtattgctgaaatcgaagatttaaaaacagttaaaggaaca
aacaaggaaggtgaagaggaagatattgtaatatctcgtacttctgagcttaaattaatt
gataagaaaacaggtattactttaagtacaaataatatcccttatggttctaccatttta
attaaaaatggagataaacttaaggcaggagatgttgtttgtcagtgggatccatataac
ggtgtaattatttctgaatttgcaggtaaagtgagatatgaaaatatcgaacaaggtatt
acttaccaagtagaaattgatgagcaaacaggtttccaagaaaaagtaatttcagagtct
agaaataaaaagttaataccaacgcttattgttgaggatagtaaaggtgaagcgattcgt
tcttacaacttaccggtaggtgcccacattatgattgatgatggagagaaaattaaggtt
ggaaaaatcttagttaaaattcctcgtaaatcttctaaggcaggggatattacaggaggt
ttaccacgtgtaacagaattgtttgaagcgcgtaacccttctaacccagcagttgttagt
gcaattgatggtgtggtttcttttggtaaaataaaaagaggtaatcgtgagattattgta
gaatctaaattaggtgaaatcaagaagtatttagtgaagttatctagccagattttggta
caagaaaatgactttattaaagcgggaatgcctttatctgatggttctgtaacgcctaac
gatatccttaatattaaaggaccatctgcagtgcaacaatacttagtaaacgaagtacaa
gaagtatatcgtctacagggtgtgaagattaatgataagcattttgaagttgttgtaaga
caaatgatgcgtaaagtaagaattattgattctggagatacaatcttcttagaagatcaa
ttagctcacaaatctgattttattgaagaaaatgataacatttttggaatgaaagtagtg
gagagtgctggagattcttctactttaaaagaaggtcagattatatctgctttccaatta
agagatgaaaattcaattttacgtcgtgaagataagcaacttgtagtaggaagagacgcg
cagccagcaacagcaacgccaatcttacaaggtattacaagagcgtctttacaaactaaa
tcgtttatatctgccgcttctttccaagaaacgactaaggtattaaatgaagcagcggta
gctggtaaaatagataatcttgaaggtcttaaagaaaatgtaattgtaggacatcgtata
ccagcaggtacaggtatgagaacttatgagaatattatagtaggatctaaagaagaattt
gatcaaatgatgaaagcaaaacaagaagttaattataactaa
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