Olsenella sp. oral taxon 807: ADJ70_02485
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Entry
ADJ70_02485 CDS
T04016
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
olo
Olsenella sp. oral taxon 807
Pathway
olo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
olo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ADJ70_02485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
olo03400
]
ADJ70_02485
Enzymes [BR:
olo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ADJ70_02485
DNA repair and recombination proteins [BR:
olo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ADJ70_02485
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
TRCF
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKT48086
UniProt:
A0A0K1F113
LinkDB
All DBs
Position
complement(2170058..2173537)
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AA seq
1159 aa
AA seq
DB search
MFIDRVATQLFFAPELAPLSASLAAGEDANLAVAQSARPLVVAATWTRDPRPCLLIVSGE
EAADRVTRALSAWLGQGVVLRYPERGDWPWSDRAADVAIIGARAHAMMRLSLGEHCVVVA
SARSLLRRVPPVGSGYFMPSTFAVGDELEIGDAAELLVGMGYADVGASKDVSVPGSFCLH
GDSLDVFPAQASSPVRVEFFGDEIDRVRRMVPATGQTIGDCTDVSVLPCREIALTHETIG
RAQEALGSLAKNSSRVAADLALIEQASLAPSLDRYLPQLYGGSASPIDHISKRALVVLAE
PRALFDDCQRATDDIRAVAEGARESLEGLYTSPQELDFGSQQRLSLSSIQRSGTAPTAEL
DVRQPSIAGSDTKLLGRVRQLLHDRMAVAFAVPDRGAREHLELTFTDEHIPFEEALLVRE
RADGVTLDGASLDDKDPVRPLRRGMVTFFDAPVPAGVVVPSAHLAILSVSDLSSRMAKRR
RARRVDPTSITFPFEPGDYVVHATHGIALFSQIVRLEVDGRERDYFLLKYADEDKLYVPL
EQVDRITRYVGPDGTSPRLTRLNTADWSRATGRARKSAKKLAFDLVDLYTRRSAVAGFAF
LPDTSAQGDMEASFPYELTVDQASALADIKADMEAPRPMDRLLCGDVGFGKTEVALRAAF
KCCQDDKQVMVLCPTTILAQQHFETFFGRFAPFGLKVAVLSRFVTPAQQRRTLMGFADGS
VSVLIGTHRLLSSDVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTM
QMAVSGVRDMSLIMVPPPGRLPVKVSVGEWDPDVVSDAIRSELSRKGQVYYVSNRVTTID
DAVARVAEAAPEARVGVAHGQMSAAAVENVMLEFQEHEIDVLVATTIIESGIDNPHTNTL
IIEDSQRLGLAQLYQLKGRVGRGRVQAFAYFMFPVDRPLTPEATDRLTAINEYQDLGSGM
RIAMRDLEIRGAGSLVGAEQHGNLSNVGFDLFSQMLGEAVAEARGETQDVEPPEVTINLP
ADFYLAQEYLPEVDERVLAYRKLASATELASVDTLQEELEEKHGALPLAGQNLFDRARVR
IRAERLGVTSISLVSGRLVFQGLSLTRQQAIALKERRGIYQVKSKRLSYPLNAGKEELLG
VALGVLEDVGGGDASDEAA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgttcatagatcgcgtcgcgacccagctcttctttgccccagagctcgcgcccctgtcc
gcatcgcttgctgcgggcgaggacgcgaacctggcggttgcccagagcgcacgccccttg
gtcgtcgccgcgacgtggacgcgcgatcctaggccctgcctgctgatcgtctcgggcgag
gaggcggccgaccgtgtcactcgcgccctttccgcctggttggggcagggagtggtcctg
cgctaccccgagcgcggggattggccttggtctgacagggcggcggacgtcgctatcata
ggggctcgcgcacatgcgatgatgcgcctctcgctgggcgagcattgcgtcgtggtggcg
agtgccagatcgctgctgcgtcgcgtgccaccggtgggctcgggctactttatgccctcg
accttcgcggtgggagacgagctcgagatcggggatgcggccgagcttctggtgggcatg
gggtacgccgacgtcggtgcgagcaaggatgtgagcgtgccgggcagcttctgtctgcac
ggcgactcgctcgatgtctttcccgcgcaggcgtcctcgcccgttcgcgtcgagttcttt
ggcgacgagatcgatcgggtacgacgcatggttcccgcgacgggccagacgataggcgac
tgcacggatgtgagcgtgcttccctgtcgggagatcgcactcacgcacgagacgatcgga
cgggcgcaagaggcgctggggagcctggccaagaactcctcgagggtggccgcagacctc
gccctcatcgagcaagcctcgttggcaccctcgctcgatcgctacctgccccagctctac
ggtggctcggcaagtcccatcgaccatatctcgaagcgcgcgctggtggtcctcgcggag
ccgagggccctctttgatgactgtcagcgcgctaccgacgacatcagagctgtggcagag
ggcgcgcgcgagagcctcgagggactctatacgtcaccgcaagagctcgacttcgggagt
cagcagcgcctgtccctctcgtcgatccagcgctcgggcaccgcgccgacggcggagctt
gacgtgcgccagccgtccatcgccggttctgacaccaagctcttgggtcgcgtgcgccag
cttctgcacgataggatggcggttgccttcgccgtacccgatcgcggagcccgcgagcat
cttgaactgacctttaccgatgagcacatcccgttcgaagaggcgctccttgtgagggaa
cgtgcggacggtgtgaccttggatggggcttctctcgacgacaaggaccctgtgcgcccc
ctcaggcgggggatggtcaccttctttgacgcgccggtgccggcgggtgtcgtggtgccc
tcggcgcacctggcgatcctctcggtatctgacctcagctctcggatggccaagcgccgc
cgtgcacgccgcgttgaccccacctcgatcaccttcccgttcgagccgggcgactacgtg
gtccatgcgacccatggcatcgcgctgttctcccagatcgtgcgcctagaggttgacggt
cgcgagcgcgactactttcttctcaagtatgcagacgaggacaagctctatgtgccgctt
gagcaggtggaccgtatcacgcgctacgtgggtccggacgggacgtcccctaggctcacg
cgcctcaacacggccgattggtctcgggcgacaggcagggctcgcaagagcgcaaaaaag
ctcgcctttgacctcgtggacctctacacgcgtcgatcggcggtcgcgggcttcgccttt
ttgccggacacgtcggcgcagggcgacatggaggcgagctttccttacgagctgacggtg
gaccaggcctcggcgcttgctgacatcaaggccgacatggaggcgcccaggcccatggac
aggctgctctgcggtgacgtgggttttggtaagaccgaggtcgccctgcgcgcggccttc
aagtgttgccaggacgacaagcaggtcatggtgctctgtccgacgacgatcttggcccag
cagcacttcgagaccttctttggacgtttcgccccgtttggcctcaaggtagcggtgctc
tcacgcttcgtgacgccggcacagcagcgacgcacactcatgggctttgccgacggatcg
gtgagcgtgctcatcgggacgcaccgcctgctctcgtcggacgtgaacccgcacgacctc
ggccttgtcatcatagacgaggagcagcgctttggcgtgcagcacaaggagcagctcaag
aacatgcgcgagcaggtggacgtgctgacgctctctgcgacgcccattccgcgcaccatg
cagatggccgtgagcggtgtgcgtgacatgagcctgatcatggtgccgcctccgggacgc
cttcccgtgaaggtctcggtgggcgagtgggaccccgacgtggtctctgacgccatccgt
agcgagctgagccgcaagggtcaagtctattatgtgagcaatcgcgtgactacgatagat
gacgcggtcgcgcgcgtggcggaggcggcgcccgaggcccgtgtcggcgtcgcacatggg
cagatgagtgcggcggcggtcgagaacgtgatgctcgagtttcaggagcacgaaatcgac
gtgctcgtggcgacgaccatcatcgagagcggcatagacaaccctcacaccaacacgctc
attattgaggactcacagcgcctgggcctcgcccagctctaccagctcaagggacgcgtg
gggcgagggcgcgtccaggccttcgcatacttcatgttcccggtcgaccgtcccctcacg
cccgaggcgaccgatcgtcttaccgcgatcaacgagtaccaggacctgggtagcggcatg
cgcatagcgatgcgcgacctcgagatccggggagcggggtcgctggtgggtgcggagcag
cacggcaacctctcgaatgtgggctttgacctcttttctcagatgttgggtgaagccgtt
gccgaggcgcggggcgagacgcaggacgtggagcccccggaggtcacgatcaacctgccg
gccgacttctacctggcacaggagtatctgcctgaggtggacgagcgcgtgctcgcgtac
cgtaagcttgcctcggcgacggaactcgccagtgtcgatacgctacaagaggagcttgag
gagaagcacggcgcgctgccgctcgcaggccagaacctcttcgatcgcgcccgcgtgcgc
atacgtgccgagcgcctgggtgtgacgagcatctcgctcgtgagcggtcgccttgtcttt
cagggcctttcgctcacgcgccagcaggcgattgcactcaaggagcgcagaggtatctat
caggtcaagagcaagcgactctcgtatcccctcaacgctggcaaggaggagttgctgggc
gtcgcgcttggcgtactcgaggacgtcggtggtggtgatgcgtccgacgaggctgcctga
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