Ostreococcus lucimarinus: OSTLU_119295
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Entry
OSTLU_119295 CDS
T01029
Symbol
tdc
Name
(RefSeq) transducin / WD-40 repeat protein, putative
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSTLU_119295 (tdc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_119295 (tdc)
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
OSTLU_119295 (tdc)
mRNA degradation factors
5'-3' decay
Decapping complex
OSTLU_119295 (tdc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
Beta-prop_HPS5
WD40_WDHD1_1st
WD40_like
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Pdc1_Ge1
Beta-prop_WDR90_POC16_2nd
WDR55
Motif
Other DBs
NCBI-GeneID:
5000165
NCBI-ProteinID:
XP_001416047
JGI:
119295
UniProt:
A4RTM4
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Position
2:join(18103..18157,18363..18457,18583..21063)
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AA seq
876 aa
AA seq
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MSTAAARALAAVVDAERSVTNVAKGRVLNRMEEYVDVERREDGEDASALEVAPITVYETK
YVEAQLRMIAVNDAFICYGIRNGLIRVFSRKSGNVRSLLRGHSDSISTLKFLANTDVLLS
VDVRGRVMVRKLSLQGADDGASIDVSDDNDAGWTIGSQNLVDFDFAVDTPDGHLPPSACW
LPLDSRKPGKCEFALSAGTCVVCYECSLMKKGDAIAAEIDLNAPPAMDGLQVIEFDAPVS
CVDSAPAGRKLVAASEGRAYVLVKEDGETEFECTDTLPWTVETAVFASAERVILGNDNNS
ELIVVDVTQETPFAVQRVVFKSDSDKLFNVCLQHNPETGIVLLSNTRMNTVYALHFEKSF
DYIARFEASQPILSFDSHVKYDGDGSATMQLFCLQTQAIQTLSMPAEACIPPDGALEALG
SLGTPKTKGSLEHSSSATLLTPDMFGGAELAGDEEDEEEERAAVVPSKKAAAAQPASSEE
SMGESGAEEEEGEDEEFESANMSESGAGAIPVAAAFDMKQLRATIRNEMRELLNEVRDER
RLAAEERKADMERARKANETAAANLKRDVTNAIAALLQQHSVDNAKTLEAGIGRAQSVAA
TSAQTAMKSIVGPSIDAAVRAQMETSVVPKMEIACSTMFTQVKHTFERGMADLNTELLAA
RESAAISQATPFVSGLRQATTEVRQAATALMTDIPNQVAQAMAKVTARAPSGMGAPPGMA
PKSVTQGKTLAQIEQRLDPTVEISKLLQANQIDRAFNLALSMSKVEVVMWLVNQVASDRI
FGQTPCPLSQGVLLSLVQQLSSDLTTPDAPKKLDWIRDSCLAVDPADPVLRQHMRPVLST
VHQSLMAAANSPTSAPEVRAGTRLCIHVVNSMLSSL
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgtccacggcggcggcgcgcgcgctcgcggcagtcgtcgatgcagaacggagcgtgacg
aacgtggcgaaagggcgggtgttgaaccgaatggaggaatacgtcgacgtcgagcgtcgc
gaagacggcgaagacgcgagcgcgttggaggtggcgccgattaccgtgtacgagacaaaa
tacgtcgaggcgcagttgcgaatgatcgccgtgaacgatgctttcatatgttacggtatt
cgaaacgggttgattcgagtgttttctagaaagtctggcaatgtgcgatcgttgcttcgc
ggacactccgattcaatctcgacgctcaagtttttggcgaacaccgacgtgttgctctcg
gtggacgtgcgaggacgggtgatggttcgcaagttgagtttacaaggcgccgacgatggg
gcctcgatcgatgtgagcgacgataacgatgcgggatggacgatcggttcgcagaatttg
gtagacttcgacttcgcagtggacaccccggacgggcacctgccgccgtcggcgtgctgg
ctcccgctagattcgcgaaaacccggcaagtgtgaattcgccctgagcgcggggacgtgc
gtggtgtgctacgagtgctcgctgatgaagaaaggggatgcaattgcggctgagatcgat
ctcaacgccccgccagccatggatggtttacaggtgatcgagtttgatgccccggtgtct
tgcgtggacagcgcccccgcgggtcgcaagctcgtcgccgcgagcgagggccgtgcgtac
gttttggtgaaggaggacggtgaaacggagtttgagtgcacggatacacttccatggacg
gtggaaaccgccgtcttcgcctcggctgaacgcgtaattctgggtaacgataataactca
gagttgatcgtcgtcgacgtgacgcaagaaactcctttcgcggtgcagcgcgtcgtcttt
aagtcagacagtgacaaacttttcaacgtatgcttgcagcataaccccgaaacaggaatc
gtattgctttcgaacacgcgtatgaacacggtgtacgctttacacttcgagaagagcttt
gattacattgcgcgctttgaggcgtcgcaaccgattttgagctttgactcccacgtgaag
tacgatggcgacggcagtgcgacgatgcaattgttttgcttacagacgcaagcgattcaa
accttgtccatgccggctgaagcatgcattccaccagacggagctctcgaggcgctcggc
tcgttgggtacgcccaagacgaaaggttcgctcgagcactcatcttcagccactctgctc
actccggatatgtttggcggcgctgagctcgccggcgacgaggaggacgaagaggaagag
cgtgcagcggtagttccatcgaaaaaggctgctgcggcccaaccagcgtcgtccgaagaa
agcatgggcgagtctggtgcagaggaagaagagggagaagatgaagagtttgagtctgcc
aacatgagtgagagcggcgctggtgcgattcccgtcgccgccgcgttcgatatgaagcag
ttgagagcgactattcgtaacgaaatgcgcgaacttctgaacgaagttcgcgatgagcgt
cgtctggctgcagaagagcgcaaggcagacatggaacgcgctcgtaaggcgaacgaaacc
gcggcagccaacttgaagcgagacgtcacgaatgctatcgcggctctgttgcaacaacat
tccgtggacaatgcaaagactttggaagctggcatcggacgcgctcaatctgttgctgca
acaagcgcgcaaactgcgatgaagtccatcgtcggtccatccattgacgccgctgttcga
gcgcagatggaaacctccgtcgtgccaaaaatggaaatcgcgtgctcgacgatgtttacg
caagtcaagcacacgtttgaacgaggtatggctgacttgaacaccgagcttctcgctgcg
agagaatctgcggcaatttctcaagcgacgccgttcgtctccggtttgcgccaggcgacg
accgaggttcgccaagccgcaacagctttgatgaccgatatcccaaatcaagtcgcgcaa
gccatggcgaaggtcacggcgcgcgcaccttcgggcatgggcgcacctcccgggatggcc
ccaaagagcgtgacgcaaggtaagacgctcgctcaaatcgaacagcgcttggacccaact
gtggagatcagcaagttgctacaggcaaaccaaatcgaccgcgcgttcaatctggcgctc
agcatgagcaaggttgaagtcgtcatgtggctcgtcaaccaagttgcgagtgatcgaatc
tttggccaaacaccgtgtccgttgtcgcaaggtgtgctcttgtcgcttgttcagcagctt
tcgagcgatttgacgacgccagacgcgcccaagaagctcgattggattcgagattcttgc
ctcgccgtcgatccggcggatcccgtgttgcggcaacacatgcggccggtgctcagcacg
gtgcaccagtcgctcatggctgcggccaattcaccgacgagtgcgccagaagtacgcgcg
gggacacgattgtgtatccacgtcgtgaattccatgttatcttctttgtaa
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