Ostreococcus lucimarinus: OSTLU_119612
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Entry
OSTLU_119612 CDS
T01029
Symbol
caf1
Name
(RefSeq) polyA tail-shortening ribonuclease, probable
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSTLU_119612 (caf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_119612 (caf1)
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
OSTLU_119612 (caf1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
OSTLU_119612 (caf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
5000303
NCBI-ProteinID:
XP_001416204
JGI:
119612
UniProt:
A4RSQ5
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Position
2:join(645618..645755,645808..646500)
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AA seq
276 aa
AA seq
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MSSALTPSTLHTRDVWAHNLDEECALIREVVCNYPYVAMDTEFPGVVARPVGSFKHQAEF
QYQTLRCNVDLLKLIQLGLTFSDGAGNLPVVDGRFCIWQFNFKEFNVKDELYAQDSIELL
KESGIDFNLLEERGIDIVQFGEKLMVSGVVLNDDIRWLTFHSSYDFGYLLKLLTNAPLPD
KEADFFTLLQCYFPCIYDIKHLMQFVGNMHGGLNKLAEYLHVARIGPQHQAGSDSLLTAH
TFFKLQKSHFSNVNMHQFAGSLYGLGQESLSQPIAD
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcgcgttgacaccatctactttgcacacacgtgatgtatgggcgcataatttg
gatgaagagtgtgcactgattcgtgaggttgtatgtaactacccatatgtcgcgatggat
accgagtttcctggtgttgtcgctcgcccagttggctctttcaaacaccaagccgaattt
caataccaaactttacgttgcaatgtggacttgctcaagttgattcaacttggtttgaca
ttttcagacggtgctggaaatttaccagtcgtcgatgggcggttctgtatatggcaattc
aacttcaaagaattcaacgttaaagatgagctctacgcgcaagattctatcgagctatta
aaggaaagtggtatcgatttcaatttgctggaggaacgtggaatagacattgttcagttt
ggcgagaaacttatggttagtggtgtggttttgaacgatgatatccgctggttaacattt
catagtagttacgactttgggtacttactcaagctactgacaaacgctccactgcctgac
aaagaggctgacttttttacacttctgcagtgttatttcccgtgtatttatgacatcaaa
cacttgatgcagtttgttggtaacatgcacggcggactgaataaacttgccgaatattta
catgtagcacgtatagggcctcagcaccaggccggtagtgatagtttgctcaccgcacat
acgtttttcaagcttcagaagtctcacttctcaaatgtgaacatgcatcagttcgctgga
tcgttatatggtttaggtcaggaatctctcagccagcccatagctgattga
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