Ostreococcus lucimarinus: OSTLU_12120
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Entry
OSTLU_12120 CDS
T01029
Name
(RefSeq) predicted protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OSTLU_12120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
olu03041
]
OSTLU_12120
03009 Ribosome biogenesis [BR:
olu03009
]
OSTLU_12120
Enzymes [BR:
olu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OSTLU_12120
Spliceosome [BR:
olu03041
]
Complex A
U2 snRNP components
U2 related factors
OSTLU_12120
Complex B
OSTLU_12120
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
OSTLU_12120
Ribosome biogenesis [BR:
olu03009
]
Eukaryotic type
90S particles
Helicases
OSTLU_12120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
HA2_N
Helicase_C
AAA_19
AAA_22
AAA_30
nSTAND3
SRP54
T2SSE
NACHT
TsaE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
4999697
NCBI-ProteinID:
XP_001415865
JGI:
12120
UniProt:
A4RRA6
LinkDB
All DBs
Position
1:complement(572287..574380)
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AA seq
697 aa
AA seq
DB search
MGDEEKTPKKAKTTADDDDDGINKHTGNALSRRYYDILEKRKTLPVWLQKREFIEKLSQS
QTMILVGETGSGKTTQVPQFVVDAGYTADGKMCVCTQPRRVAAMSVAKRVADEMDVNIGE
EVGYSIRFEETTGPKTMLKYATDGMLLREAMTDPLLSRYSVVVIDEAHERTLATDILFGL
LKEILVKRKDLKCVVMSATLEAEKFQGYFLDAPLMKVPGRMHPVEIFYTQEPERDYLESA
IRTVTQIHQCEPPGDILLFLTGEEEIEDACGKIRREIQNLGDEVGVVNVVPLYATLPPAM
QQKIFDKAPEGKPGKPAGRKIVVSTNIAETSLTIDGIVYVIDPGFSKQKVFNPRIRVESL
LVSPISRASAQQRAGRAGRTQPGKCFRLYTEQSFKKDLQEQTYPEILRSNLGSVVLQLKK
LGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDDGNLTTVGQVMAEYPLDPQLAKMLV
TSCEFKCSNEVLSIVAMLSVPMCFIRPRDQAEQADAAKAQFAHVDGDHLTLLNVYHAYKQ
AKDDPDWCWNNYISHRAMKSADNVRTQLVRICQRFNLPLVSTDFASRDYYPNIRKAILSG
YFMQVAHLERGGRYLTVKDNQEVMLHPSTCLDRKPEWVVYNEFVLTSKNYIRTVTDVRGE
WLIDLAPHYYDLSNFPMCSAKEVLKRYYHQRERESKK
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgaagaaaagacgccgaaaaaggcgaagacgacggcggacgacgacgacgat
gggatcaataagcacaccgggaacgcgctgtcgcggcggtactacgacatcctggagaaa
cggaagaccctgccggtgtggttgcagaagagggagttcatcgaaaagctgagtcaaagc
cagacgatgattttggtcggggagacggggagcgggaagacgacgcaggtgccgcaattc
gtcgtcgacgctggatataccgcggatgggaagatgtgcgtgtgcacgcagccgagacga
gtggcggcgatgagcgtggcgaagcgggtggcggatgagatggacgtgaacatcggcgag
gaggtgggctattcgattcgtttcgaagaaaccacggggccgaagacgatgttaaagtac
gcgacggatggcatgttgcttcgtgaggcgatgacggatccgttgttgtcgcgatattcc
gtcgtcgtcatcgatgaggcgcacgaacggacgttggcgacggatattttgtttggttta
ttgaaggaaattttagtcaagcgcaaagacttgaagtgcgtggtgatgtctgcgacgctc
gaggcggagaagtttcaggggtacttcttggacgcaccgttgatgaaggttccgggtcgt
atgcacccggtggagatcttctacacgcaagaaccggagcgcgattacttagaatcagcg
attcgtacggtgacgcaaattcaccaatgcgagccgccgggggacattttgttgttcttg
acgggcgaggaagaaatcgaggacgcgtgcgggaagattcgtcgtgagattcaaaactta
ggcgatgaggtgggtgtggtgaacgtcgtaccgctctacgccacgcttccgccggcgatg
cagcagaaaatcttcgacaaggcgccagagggaaaaccgggcaaacccgccgggcgcaaa
atcgtagtctccacaaacatagccgaaacgtctttgacgatcgatgggatcgtgtacgtg
atcgatcctggcttctcaaagcaaaaagtgttcaatccgaggattcgagtggagtctctc
ctcgtgtcgcccatttcgagagcctcggcgcaacaacgcgccggtcgcgccggtcgtacg
cagcctggtaaatgcttccgcttgtacaccgaacagtcgttcaagaaggatttgcaggag
caaacgtacccggagattttgcgatcgaacctcggaagcgtggtgttgcagctgaagaaa
cttgggatagatgatttagtgcacttcgactttatggatccgccggcgcccgagacgctc
atgcgggcgctggagctactgaactacctcggcgccctagacgacgacggtaacttgacc
acggtcggtcaagtgatggcggagtacccgttggatccacagttggcgaaaatgctcgtc
acgtcgtgcgagttcaagtgctcgaacgaggtgctctccatcgtcgccatgctctccgtg
cccatgtgtttcattcgcccgagggatcaagccgagcaagcggacgcggcgaaggctcaa
ttcgctcacgtcgacggcgatcacttgaccttgctcaacgtttatcacgcgtacaagcag
gccaaagatgatccggattggtgctggaacaattacatcagccatcgcgcgatgaagagc
gcggacaacgtgcgcacgcaactcgtgcgcatttgccaacgcttcaaccttccgctcgtg
agcacggatttcgcgtcgagggattactacccgaacattcgcaaggccattttgagcgga
tacttcatgcaagtcgcccatctcgagcgcggtggacggtatttgaccgtcaaggacaac
caagaagtcatgcttcacccgtccacgtgcctcgatcgcaagcccgagtgggtcgtctac
aacgagttcgtgttgacgtcaaagaattacattcgcaccgtcacggacgttcgtggcgag
tggctcatcgacttagcgccgcactattacgacctctcaaacttcccgatgtgttccgcc
aaggaggttttgaagaggtattatcatcagcgcgaacgcgaatcgaaaaagtag
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integrated database retrieval system
