Ostreococcus lucimarinus: OSTLU_12601
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Entry
OSTLU_12601 CDS
T01029
Name
(RefSeq) predicted protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03018
RNA degradation
olu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OSTLU_12601
09123 Folding, sorting and degradation
03018 RNA degradation
OSTLU_12601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_12601
03041 Spliceosome [BR:
olu03041
]
OSTLU_12601
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
OSTLU_12601
mRNA degradation factors
5'-3' decay
Lsm complex
OSTLU_12601
Spliceosome [BR:
olu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
OSTLU_12601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
5002173
NCBI-ProteinID:
XP_001418193
JGI:
12601
UniProt:
A4RYM9
LinkDB
All DBs
Position
6:243915..244262
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AA seq
115 aa
AA seq
DB search
MLPLTLLKTSCGHPMLVELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMAECY
VRGNTIKYVCVPDEVLDVVKEEMKNRPQGGGRGEGGRGGRGGRGGRGRGGRGRGE
NT seq
348 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgttgacgctgctcaagacgtcgtgcgggcaccccatgctggtggagctgaag
aatggagagacgtacaacggcacgctggcgtcgtgcgacacgtggatgaacgtgcacctg
aaggaggtgatttgcacctccaaggatggcgatcggttttggcgaatggcggagtgttac
gtgcgcgggaacacgatcaagtacgtgtgcgtgccggacgaggtgctggacgtggtgaag
gaagagatgaagaatcgtccgcagggcggcggtcgaggcgagggcggtcgaggcggtcgc
ggcggtcgcggcgggcgcggtcgcggaggcaggggacgaggcgagtga
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