KEGG   Ostreococcus lucimarinus: OSTLU_12601
Entry
OSTLU_12601       CDS       T01029                                 
Name
(RefSeq) predicted protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
olu  Ostreococcus lucimarinus
Pathway
olu03018  RNA degradation
olu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:olu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OSTLU_12601
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OSTLU_12601
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:olu03019]
    OSTLU_12601
   03041 Spliceosome [BR:olu03041]
    OSTLU_12601
Messenger RNA biogenesis [BR:olu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     OSTLU_12601
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     OSTLU_12601
Spliceosome [BR:olu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    OSTLU_12601
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 5002173
NCBI-ProteinID: XP_001418193
JGI: 12601
UniProt: A4RYM9
LinkDB
Position
6:243915..244262
AA seq 115 aa
MLPLTLLKTSCGHPMLVELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMAECY
VRGNTIKYVCVPDEVLDVVKEEMKNRPQGGGRGEGGRGGRGGRGGRGRGGRGRGE
NT seq 348 nt   +upstreamnt  +downstreamnt
atgcttccgttgacgctgctcaagacgtcgtgcgggcaccccatgctggtggagctgaag
aatggagagacgtacaacggcacgctggcgtcgtgcgacacgtggatgaacgtgcacctg
aaggaggtgatttgcacctccaaggatggcgatcggttttggcgaatggcggagtgttac
gtgcgcgggaacacgatcaagtacgtgtgcgtgccggacgaggtgctggacgtggtgaag
gaagagatgaagaatcgtccgcagggcggcggtcgaggcgagggcggtcgaggcggtcgc
ggcggtcgcggcgggcgcggtcgcggaggcaggggacgaggcgagtga

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