KEGG   Ostreococcus lucimarinus: OSTLU_13673
Entry
OSTLU_13673       CDS       T01029                                 
Name
(RefSeq) predicted protein
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
olu  Ostreococcus lucimarinus
Pathway
olu03020  RNA polymerase
olu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:olu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    OSTLU_13673
  09124 Replication and repair
   03420 Nucleotide excision repair
    OSTLU_13673
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:olu03021]
    OSTLU_13673
   03400 DNA repair and recombination proteins [BR:olu03400]
    OSTLU_13673
Enzymes [BR:olu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     OSTLU_13673
Transcription machinery [BR:olu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     OSTLU_13673
DNA repair and recombination proteins [BR:olu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      OSTLU_13673
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 4999792
NCBI-ProteinID: XP_001415447
JGI: 13673
UniProt: A4RQU3
LinkDB
Position
1:join(297186..297233,297516..297624,297744..301111)
AA seq 1174 aa
MRVDSREDDEEEEIGQEDAWVVISSFFEEKGLVRQQLDSFNEFIQHTMQEIVDEMREIEL
TPEHQHMPGQDIDSMEKKTYKISFNQIYLSKPMVTEADGYTTTLFPKEARLRNLTYSAPL
YVDMVKEVTTVQPDGETTVEKEILNKNFIGKVPIMLRSDYCSLHGHTDKELTELGECPYD
EGGYFVINGSEKVLIAQERMSTNHVYVFEKKQPSKFMWQAECRSQPERGSRGASSCVMRQ
LHAPGTKDAPGPIRCTLPYIRTDIPIFVVFRALGFVADKDILEHIVYDLADNEMMEMLRP
SIEEAFVIQSQEVALDFIGKRGSAVGVSREKRIKYAKEILQKELLPHVGVREDCETKKAY
FLGYMIHRLLLCSLGRRPEDDRDHYGNKRLDLGGPLLAQLFRQLFRKLTKDVRLYCQRCI
DSGKEIQLQLAIKAKTITQGLKYSLATGNWGSQGAADIRAGVSQVLNRLSYSSTLSHLRR
INSPIGREGKLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMALVSVGSPSEPILEF
LDEWTMENLEEISPSLIAESTKIFLNGVWVGVHRNPADLVRTLRKLRRQCDIDSSVSVVH
DIRLKELRLYTDYGRCTRPLFIVEDDQKLKIKKQHIELLTEKDVTGYTWNELVTSGFIEY
VDTEEEETTMISMTIDDLVAGRHAVEQNTGVAINYTHCEIHPSMILGICASIIPFPDHNQ
SPRNTYQSAMGKQAMGMYVTNYQIRMDTLGYVMFYPQKPLVTTRAMEYLHFRELPAGCNA
VVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDEEKKQGSLSREEFERPDRDTCL
GMRHGTYDKLDDDGLICPGTRVSGDDIIIGKTAPLPEDDTAVLSKRFSKKDCSTGMKHAE
TGIIDQVLLTTNDQGLRFVKLRVRSMRTPQVGDKFSSRHGQKGTVGMTYTQEDMPFTCEG
ITPDIIVNPHAIPSRMTIGQLVECIMGKVAACMGKEGDATPFTPVTAEDISSMLHKCGYQ
KRGNEVMYNGHTGRMLDAQIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRD
GGLRFGEMERDCIMSHGAASFLKERLMDQSDAYRIHVCQKCGLIAVANLKNQTFECCKNP
SERTSVVQVMVPYACKLLFQELMSMAIAPRLITG
NT seq 3525 nt   +upstreamnt  +downstreamnt
atgcgcgtcgactccagagaagacgacgaggaagaagagatcggacaggaagacgcgtgg
gtcgtcatcagttccttcttcgaggagaagggtttggtgcgccaacaactcgactctttc
aatgagttcatccagcacacgatgcaagagattgtcgatgagatgcgggagattgagttg
acgccagaacatcaacacatgcccggacaggatatcgattcgatggagaagaagacgtac
aagattagctttaaccagatttacctcagcaagccgatggtgaccgaggcggatggatac
accacaacgctgttcccaaaggaagcgagattgcgtaatctcacgtattcggcgccgttg
tacgtcgatatggtgaaggaagtcacgacggtgcaaccggacggggaaacgacggtggag
aaggagattttgaacaaaaacttcatcggcaaggttccgattatgctgcgctctgattac
tgttcgcttcacggacacacggacaaggagttgaccgagctcggggagtgcccgtacgat
gagggtggttatttcgtcatcaacggtagcgagaaggtgctcatcgcgcaggagcgtatg
agtacaaaccacgtgtacgtgttcgagaagaagcaaccgagcaagtttatgtggcaggct
gagtgccgcagtcaaccggagcgcgggtctcgcggcgcgagctcgtgcgtgatgcgacaa
cttcacgccccggggactaaggacgcgcctggtccgattcgatgtacgctaccgtacatt
cgaacggatattcccatcttcgtcgtgttccgcgctctcggcttcgtcgcagacaaggat
atcttggagcacatcgtgtacgatctcgcggacaatgaaatgatggagatgttgaggccg
tctatcgaagaggctttcgtgatccaatcgcaagaagtggcgctcgatttcatcggtaag
cgtggatccgccgtcggcgtttctcgcgagaagcggatcaagtacgcaaaggagattttg
caaaaagagctacttccccacgtcggcgtgcgtgaggattgcgaaacgaagaaggcgtac
tttttgggttacatgattcaccgtttgttgctgtgctctctcggacgccgtccggaagac
gatcgtgatcactacggcaataagcgtttggatctcggcggtccgttgttggcacaattg
ttccgacaattgttccgcaaacttaccaaggacgtgcgtctgtactgccaacgctgcatt
gacagcggcaaggaaattcagctccagctcgcgatcaaggcgaaaacgatcactcagggc
ttgaagtattccctcgccaccggtaactggggatcgcaaggagctgcagatattcgggca
ggtgtcagccaagtgctaaaccgcctttcgtattcgtccaccttgtcgcatcttcgtcgc
atcaactctccgatcggtcgtgagggtaaattggccaagcctcgtcagctgcacaactca
ttgtggggtatgatttgtcccgcggagactcccgaaggccaagctgtcggtttggtgaag
aacctcgcgctcatggctctcgtttccgtcggttctccctcggagccgatcttggagttc
ttggacgagtggaccatggaaaacttggaagaaatctctccgtcgttgattgctgagtcg
acgaagattttcctgaacggcgtgtgggttggcgtgcatcggaacccggcggatttggtc
agaacgctgcgcaagcttcgccgtcagtgtgacatcgattcttcagtgagtgtcgtgcac
gacattcggttgaaagagcttcgattgtacaccgattacggtagatgtacgcgtccgctc
ttcatcgtcgaggacgatcaaaaactcaagatcaaaaagcaacacatcgaattgttgacg
gagaaggacgtcacagggtacacctggaacgaactcgtcacgtcgggttttatcgagtac
gtcgacactgaagaagaggaaacgaccatgatttccatgaccatcgatgatcttgttgcc
ggtcgccacgcggtcgagcaaaacaccggcgttgcgatcaactacacgcactgcgagatt
cacccgtcgatgattcttggcatctgtgcctccattattcccttccccgaccacaaccag
tcgccgcgtaacacttatcaaagtgcgatgggtaagcaagcgatggggatgtacgtgacg
aactaccaaatccgcatggataccctcggttacgtcatgttttacccgcaaaagccactt
gtcacgacgcgcgccatggaatacttgcacttccgcgagcttcccgctggttgcaacgcc
gttgtcgccatcatgtgctacaccggttacaaccaagaagattccgtgctcatgaaccaa
agcgccatcgatcgcggcttgttccgttctctctactacagatcgttcaaagacgaggag
aagaagcaaggcagcttgagccgagaagagttcgagagaccagacagagacacgtgcttg
ggtatgcgtcacggcacttacgacaaactcgatgacgatggtttgatttgcccgggtacg
cgcgtgagtggtgatgatatcatcatcggtaagacggcgccgcttcccgaagatgacacc
gccgtgctgtccaagcgcttctcgaagaaggattgctccacgggcatgaagcacgcggag
actggcatcatcgatcaagtgctgctcacgacgaacgatcaaggtttacgtttcgtcaag
cttcgcgtccgctcgatgagaacgccgcaggttggcgacaagttttcttcgcgtcacggg
cagaagggtaccgtcggcatgacgtacacgcaagaagacatgccgttcacgtgcgagggt
atcacgcccgatatcatcgtgaaccctcacgctattccttcgcggatgacaatcggtcag
ctcgtggagtgtatcatgggcaaggttgcggcgtgcatgggcaaggaaggggacgctacg
ccattcaccccggttactgcagaagacatctcttcgatgctgcacaagtgtggctaccaa
aagcgtggtaacgaagtcatgtacaacggtcacacggggcgcatgctggacgcgcaaatc
ttcatcggtccgacgtattaccagcgcttgaagcacatggtagacgataagattcactcg
cgcgggcgcgggccggtgcaaatcttgactcgtcaaccgatggagggccgctcgagagat
ggtggtcttcgtttcggggaaatggaacgagattgcatcatgagtcatggtgctgcctct
ttcctcaaggaacgattgatggatcaatccgacgcttacagaatccacgtttgccaaaag
tgcgggttgattgccgtggccaacttgaagaaccaaacgtttgagtgctgcaagaacccg
agcgaacgtacgtcggtcgtccaagtcatggttccgtacgcttgcaaacttctgttccaa
gagctcatgagtatggcgatcgccccgagactcatcaccggttaa

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