Ostreococcus lucimarinus: OSTLU_14940
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Entry
OSTLU_14940 CDS
T01029
Symbol
PAFC3501
Name
(RefSeq) predicted protein
KO
K15176
RNA polymerase-associated protein CTR9
Organism
olu
Ostreococcus lucimarinus
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
olu03021
]
OSTLU_14940 (PAFC3501)
Transcription machinery [BR:
olu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
OSTLU_14940 (PAFC3501)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_16
TPR_19
TPR_2
TPR_12
TPR_14
TPR_1
TPR_8
TPR_17
TPR_11
ANAPC3
TPR_CcmH_CycH
TPR_6
ARM_TT21_N
HAT_PRP39_C
TPR_9
DUF7017
TPR_21
TPR_10
Fis1_TPR_C
ALMT
ARM_TT21_5th
TPR_4
Motif
Other DBs
NCBI-GeneID:
5001313
NCBI-ProteinID:
XP_001417181
JGI:
14940
UniProt:
A4RVP5
LinkDB
All DBs
Position
4:join(216029..216248,216420..219379)
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AA seq
1059 aa
AA seq
DB search
MSPRNAVAVALLNDPNECVVVDLDALPTDVEDVASVLQAELAPLEAWIEVTEAYLRRGDA
RGFETLMEMVCAPEIEEVYREQAYGRAAVLCLYASYWANRAARETDAVSREEGFIKAGAY
LNQAAGIHRKPEQIVAIGRAHLAFARGATGEGEKLIDQALGLKDDGRDNITPMLWKAVLL
YKKERYQDALTWYKRALRAFPSAPAPVRLGIGACQYKLGDFKTAKLAFARVLKLDERNVE
AMLGLALCELSLHDIRSQQHLDSVAAAMRLLERAFMHDPHNQAVNNVISDNLLMADDYEK
VEKLTRLALQNNAETPRNRAKAAFNQARALHARGQVPQAQALYLTATNLDEHYVPPYFGL
GQIALAKGDVKLAWNYMDKAHGEFGESMTVTRMFAHLCASTGRSEQAAEMFREVVKQGGN
DVDAMLELGELLETQDPKAALKAYSAALKMLAAKGEEGPITAIKNNIGVLNVQLGKFDEA
REAFTEALQALGGDADQLEGKLKGAKAKKALQPGVAPIAFNLALLEEQQGNNAAAEARYD
AILAAQPDYIDSILRQAKIRAERGDYDMALERTNEAIAAKSDSADALALAGWVLLKAKRW
SEAEQQFAALRNLPKPDAAANAKEKTLTHDEYAMVSAANAAYYSAIKEGVLKRNDPKVLK
REEEHYERAYSLFQKTLQKNGSNVYAANGLGIILAERGRIDEAKTVFQIVQEGMAAKGSI
NPDILINQGHVYLAKAQYVQASKLYERAQSQFYFNQNENVMLYQARAHYENGNLEEARKI
LRKALLIAPWNHRIRFNLAYVIQEMAQRTLNRTMKSTSSDGRLAQVESAIEDLTTALKLF
EQLQTLGNQAEFGFDAKRTSVHVSFCKQALTKSKPHLEAAQKEEASISAAKNAQLTARRA
IEEGRAAQKAAEELAKETHAKELEAIAAQSERRFKESQARWMSEQAVERPTKKGAKGLGA
APVGEATSDLSEDDDEPAPETRAPPTAEELARQKEALAAAGLADSDDEDEDEDEDAQPSA
DVEAPAEKKRSADETDEAQAEAAAPKRRRRAVVDDDDDE
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgcgaaacgcggtcgccgtcgcgctgctgaacgacccgaacgaatgcgtcgtc
gtcgacctcgacgcgctgccgacggacgtcgaggacgtcgcgagcgtcctccaggcggag
ctcgcgccgctcgaggcgtggatcgaggtgacggaggcgtacctcaggcgaggcgacgcg
cgagggttcgagacgctgatggagatggtgtgcgcgccggagatcgaggaggtgtatagg
gaacaagcgtacggacgcgcggcggtgctgtgcctgtacgcgtcgtattgggcgaatagg
gcggcgcgggagacggacgcggtgagccgagaggaggggttcatcaaggcgggcgcgtac
ttgaatcaagcggcgggaattcacaggaaaccggaacagatcgtggcgatcggacgcgcg
cacctggcgttcgcgcgcggggcgacgggagagggcgagaaactcatcgaccaggcgctc
gggctcaaggacgacggtagggataacatcacgccgatgctgtggaaggcggttttattg
tataagaaggagcgctaccaagacgcgttgacgtggtacaaacgcgcacttcgcgcgttt
ccttccgcgcccgcaccggtgcgtttggggatcggggcgtgccaatacaagctgggcgac
ttcaagacggcgaagcttgcgtttgcgcgcgtgctcaagttggatgagcgcaacgtcgaa
gccatgctcggtttggcgctgtgcgaattgagcttgcatgacattcgtagtcagcaacac
ttggattccgtagctgcggccatgcgcctgctcgagcgcgctttcatgcacgaccctcac
aaccaagcggtgaacaacgtcatctcggacaatttgctcatggcggatgattacgaaaaa
gtagagaaactcacgcgactggcgcttcagaacaacgcggagacgccgaggaaccgagcg
aaggcggcgtttaaccaagcgcgcgccttgcacgcccgaggacaggtgcctcaagcgcaa
gcgttgtacttgacggcgacgaacctcgacgaacactacgtgccgccgtactttggtttg
ggtcaaatcgcccttgcaaagggtgatgtgaagttagcgtggaactacatggataaagca
cacggggaattcggagagtccatgaccgtgactagaatgtttgcccatttatgcgcgtcg
actggtagaagcgagcaggcggcggagatgttccgcgaagtagtgaaacagggtggaaac
gacgtcgacgcgatgttagaactcggagaactcttagagactcaagatccgaaggctgcg
ttgaaggcttacagtgccgccctgaaaatgctagctgccaagggtgaagaagggccaatt
accgccatcaagaacaacatcggcgtgttgaacgttcagttgggcaaattcgacgaggcg
cgcgaggcgttcaccgaggcgctgcaggcgctcggtggcgatgccgatcaactcgagggc
aaactgaaaggtgctaaggcgaagaaggcgttacagccaggcgttgcgcccatcgcgttc
aacttggctttattagaggaacagcaaggaaacaacgccgcggcggaggcacgatacgac
gccatcctcgccgcgcaaccggattacattgattccatcttgcgtcaagcgaaaattcgg
gccgaacggggcgattacgacatggcgctcgaacgcacgaatgaagccattgcggcgaaa
agtgatagtgccgatgccctcgccctcgctggttgggttttgctcaaggcaaagcgatgg
agtgaggcggagcaacaattcgccgcgctgcgcaacttgcccaaacccgacgccgcggcg
aatgcgaaggaaaaaacattgacgcacgacgagtatgcgatggtaagcgcggcgaacgcg
gcgtattacagcgctatcaaagagggtgtgctcaagcgaaacgatcccaaggtgctcaag
cgcgaggaggagcactacgaacgggcttactcgttgttccaaaagacgctccagaagaat
ggttccaacgtctacgccgctaatggtctcgggattattcttgctgagcgagggcgaatc
gacgaagccaagacggtgtttcagatcgtgcaagaaggcatggctgcgaaaggctcaatc
aacccggatattctcatcaaccaaggtcacgtgtacttggccaaggcgcaatatgtgcag
gcgagcaagctttacgagcgcgctcaaagccagttctactttaaccagaacgaaaatgtc
atgctttatcaagcgagggcgcattatgagaatggcaacttggaagaagcgcgcaagatt
cttcgcaaagcgttgttaatcgcgccctggaaccacagaattcgattcaacttggcgtac
gtcattcaagagatggcgcagcgcacgttgaacagaacgatgaagagcacgagctcggac
ggacgtttggcgcaagtggaaagtgcgatagaagacttgaccactgcgctcaagctcttc
gagcaattgcaaacgcttgggaaccaggcggagtttggtttcgacgccaaacgcacgagc
gttcacgtgtccttctgcaagcaagcgctcaccaagtccaaaccgcacttggaagcggcg
cagaaggaagaggcttcgatctctgcagcgaaaaacgcgcaactcaccgcgcgccgcgcg
atcgaagaaggccgcgccgcccaaaaagctgccgaagaactcgccaaggagacgcacgcc
aaggaactcgaagccatcgctgcgcagtctgagcgtcgcttcaaagaaagccaagcgcga
tggatgtcagaacaagctgtcgagcgaccgacgaagaaaggtgccaagggtctcggtgcg
gctcctgtcggtgaggccacgagcgatctttccgaagacgatgacgagcccgcacccgag
acgcgcgcgccgcccactgccgaggaactcgcgcgtcagaaagaagccctcgcggcggcc
ggtttagccgacagcgacgacgaagacgaagacgaagacgaagacgcgcaaccgagcgcc
gacgtcgaagcaccggcagaaaagaagcgttccgctgacgaaactgacgaagcccaagct
gaagccgccgctcccaagcgtcgccgacgcgccgtcgtcgacgacgacgacgacgagtga
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integrated database retrieval system
