Ostreococcus lucimarinus: OSTLU_16250
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Entry
OSTLU_16250 CDS
T01029
Symbol
CHR3508
Name
(RefSeq) predicted protein
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
OSTLU_16250 (CHR3508)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
olu03021
]
OSTLU_16250 (CHR3508)
03036 Chromosome and associated proteins [BR:
olu03036
]
OSTLU_16250 (CHR3508)
Transcription machinery [BR:
olu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
OSTLU_16250 (CHR3508)
Chromosome and associated proteins [BR:
olu03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
OSTLU_16250 (CHR3508)
Chromatin remodeling factors
BAF complex
OSTLU_16250 (CHR3508)
PBAF complex
OSTLU_16250 (CHR3508)
GBAF(ncBAF) complex
OSTLU_16250 (CHR3508)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_22
Ribosomal_S13_N
HSA
ATRX_C
Motif
Other DBs
NCBI-GeneID:
5003000
NCBI-ProteinID:
XP_001418764
JGI:
16250
UniProt:
A4S0M0
LinkDB
All DBs
Position
7:645999..>649466
Genome browser
AA seq
1156 aa
AA seq
DB search
MDAAERGAIASMPHDDAPTTTAGTTELFGKIDGETVRFLVQSSFAGDQLDELKRQIAMLR
RLRAGDRFVLPGQGTPRATKERVFGLLDLGCGAELRLSDATKTYFTHAEWMYSYRELPLF
SQLSDERSTDAAKAKFARKRDGDGRAELNLADVNRLATKPVEILEREGKRLLEHAHLREI
ERLREEADALNEMDDDGQRLALENRIKQLELVRVQQRVRNELVFAQQEIMQMPERAYKKM
VKDNIKILAEKKKKAEKKEKQEQTAFYRSVLAMRKRINEESNNARDERLARNKAVLKMHE
KLNREFMRKARDENSERLLRLEALKANDLAAYRELLAEARGRETDMTAEGEGDKYEALTS
FLNATESYLTKLGGKIAAVKIEQARSEAAAAAASEAEAKGLTEEEVKVVAEEAANSAAID
HGEAILDGAADGGDTKERYYAMAHSTQEIITHQPRMLTFGKLRDYQLVSLQWMISLYNNK
LNGILADEMGLGKTVQVCALIAYLFESKQNFGPHLIIVPNAVIVNWKAEIRRWLPKLSTV
FYVGSKDARAKIFQQQVLQLKFNVLVTSYEFIMRDRSKLSKVAWKYIIIDEAHRLKDREG
RLSRDLDKFRAQRRLLLTGTPLQNELSELWSLLNLLLPEVFDSSKVFQEWFGGNSKVSND
ADGEDWIEREKKVIVISRLHQILEPFMLRRLVQDVESKLPPRVTVIVHCPFSAFQSACYD
WIRKTASIRVEPGTRIGLAAQQNFRGYLPLQNRAMELRKLCNHPSLSYPPEKGGDFRGPN
LVRAGGKFWILDRLLVKLQRSGHRVLLFCTMTKLLDLLENYLQWRWTTPDGQDLKYCRID
GNTSLEQREIAINDFNAPHSDKFIFLLSIRAAGRGLNLQTADTVVVYDPDPNPKNEEQAI
ARAHRIGQTREVRVIHFEAVDDDIVQKKKGSKKEEVGWGGPNRSYCESLESSVRNVIQKQ
KIEMAAEIVDAGRFDGQTTHAERRETLENLLQQQANGTRTGVSVPPLKELNGKIARSQEE
WDLFNRLDEELDWPGALLSSAECPSWIKYTQDEIDQAVFANTKVGQSSVTQFNENMGRGA
RSTNNLNASGSAVWTHADRQEGDFIDRTGIADDDGDEDEESDDVAVREDSIEDIGDIDID
DIEDAEDDDDTTTLNT
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgccgaacgcggcgcgatcgcgtcgatgcctcacgacgatgcgccgacgacg
accgccggaacgacggagctgttcggcaagattgacggcgagaccgtgcggttcctcgtc
cagagctcgttcgcgggcgatcagctcgatgagttgaagcggcaaatagcgatgttgcgc
aggctgcgcgcgggcgatcggttcgtgctgccgggtcaagggacgccgcgcgcgacgaag
gagcgcgtttttggcttgttggacttggggtgcggggcggagttgcgcctgagcgatgcg
acgaagacgtacttcacgcacgccgagtggatgtactcgtatagagaattaccgctgttt
tctcaactttcggatgaaaggtcgaccgatgcggccaaggcgaagtttgcgaggaagcgc
gacggtgacggtcgagccgagttgaatctagccgacgtgaatagattggcgacgaaaccg
gtggagattttagaacgcgaggggaagaggttgttggaacacgcacatttgcgagaaatc
gaacggctgcgagaggaagcagatgctttgaatgagatggacgacgacggacaacggctc
gccttggaaaatcgcatcaaacagcttgagttggtgagggttcaacagcgagtaagaaat
gagctcgtgtttgcgcaacaggagataatgcagatgccggagcgagcgtataagaagatg
gtcaaggacaacatcaaaatactcgctgagaagaagaagaaggctgagaagaaggagaag
caagaacagacagcgttctatcgcagtgtgctagcaatgcgtaaacgtatcaacgaagag
tcgaacaacgctcgcgatgagcgcttagcaagaaacaaagctgtgctgaaaatgcacgaa
aagttgaaccgcgaattcatgcgaaaggctcgcgatgaaaattcagaacgtttgttgcgc
ctggaagcgttaaaggcgaacgatttagccgcatatcgcgagttactcgcagaggcgaga
ggtcgcgagactgatatgacagctgaaggcgagggtgacaaatatgaagctttgacttcg
ttcttaaacgcaactgaatcgtacttaaccaagcttggagggaaaattgccgcggtgaag
attgagcaagcgcgttcagaagccgccgccgccgccgcatcagaggccgaggccaaaggt
cttactgaggaagaagtcaaagtcgtcgcggaagaagcggcaaacagtgcagctattgat
catggtgaagccattttagacggtgctgcggatggtggagacacgaaggagcgatactat
gccatggcgcatagtacgcaagaaatcatcacacatcaaccgcgcatgttgacctttgga
aaacttcgcgattatcagctcgtgtccctgcaatggatgatttcgctgtataacaataag
ttaaatggtattttagctgatgaaatgggtctcgggaaaacagttcaggtgtgtgcgttg
attgcttacttgttcgaaagcaagcaaaactttggaccgcatctcatcatcgtaccaaac
gccgtgattgtgaactggaaagccgaaatcaggcgatggttgccgaaactatccaccgtg
ttttacgtcggctcaaaggatgcgcgcgctaaaattttccagcaacaagttttgcagctc
aagttcaacgtcctcgtcacttcttacgagttcatcatgcgagatcgatccaagttgagc
aaagtggcatggaagtacatcatcatcgacgaagcgcatcggctgaaggatcgcgaaggt
cgcttgagtcgggatttggataaatttagagcgcaacgtcgcttacttctcaccggtact
ccgttacaaaacgagttgtccgagctttggtctctcctaaacttgctcttacctgaggtg
ttcgactcgtcaaaagtgtttcaagaatggtttggagggaactcgaaggttagtaacgac
gccgacggcgaagattggatcgagagagaaaagaaggttatcgtcattagtcgtttgcat
cagattcttgagcctttcatgctgagacgattagtgcaagatgttgagagcaagcttccg
cctcgcgtcaccgtcatcgtccactgtccgttcagcgcctttcagtcagcttgttacgac
tggattcgtaaaacggcctccattcgcgttgaaccaggaactagaataggactggcggca
cagcaaaacttccgtgggtacttgccactccaaaacagggcgatggaactccgcaagctc
tgcaatcatccgtcgctgagttaccctcctgaaaagggtggagatttccgaggtccgaac
cttgtgcgcgcgggcggtaagttttggatattggatcgattgctcgtgaagttgcaacgc
tcagggcatcgagtgttgttattctgtactatgacaaagctccttgacttgttggaaaac
tacttacagtggagatggaccactccggatggtcaagacttgaagtattgtcgcatcgat
ggaaacacttcattggagcagcgcgagattgctattaacgatttcaacgcacctcacagc
gataagtttatcttcttgctctctatcagagccgctggtcgtggtttgaatcttcagacg
gcggataccgtggtagtgtacgatccagatccaaacccgaaaaatgaagaacaagccatc
gcacgagcgcatcgcatcggccaaacgcgagaagtgcgtgtgatccactttgaagcagtc
gacgatgacatcgtgcagaaaaagaagggaagcaagaaggaagaagttggttggggcggt
ccaaatagaagctactgcgaatccctcgagtcgtccgttcgcaacgtcattcaaaaacaa
aagattgaaatggctgctgaaattgttgatgccggtagatttgatggtcagacgacgcat
gccgaacgacgggaaactctcgaaaaccttcttcagcagcaagcaaatggcacgcgaaca
ggcgtaagcgtgcctccgttaaaagaacttaacggcaagatcgctcgctctcaagaagaa
tgggacttgttcaaccgtttggacgaagagctcgattggccaggcgctttgctgagctcg
gcagagtgtccgtcgtggatcaagtacacgcaagacgaaatcgatcaagctgtttttgca
aacactaaagttggacagtcgagtgttacgcagttcaacgagaacatgggtagaggcgct
cggtcgacaaacaacttgaacgcgagcggatcggcggtgtggacccacgccgacagacaa
gagggtgactttatcgatagaactggcatagccgacgacgatggcgatgaagatgaagag
agtgatgacgtagccgtacgggaggactccatagaagatattggagatattgatatcgat
gatatcgaagacgctgaagatgacgacgacaccacgactttgaatacg
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integrated database retrieval system
