Ostreococcus lucimarinus: OSTLU_16428
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Entry
OSTLU_16428 CDS
T01029
Symbol
RPL40
Name
(RefSeq) Ribosomal protein L40, component of cytosolic 80S ribosome and 60S large subunit
KO
K02927
ubiquitin-large subunit ribosomal protein L40e
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03010
Ribosome
olu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
OSTLU_16428 (RPL40)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
OSTLU_16428 (RPL40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
olu03011
]
OSTLU_16428 (RPL40)
04121 Ubiquitin system [BR:
olu04121
]
OSTLU_16428 (RPL40)
Ribosome [BR:
olu03011
]
Ribosomal proteins
Eukaryotes
Large subunit
OSTLU_16428 (RPL40)
Archaea
OSTLU_16428 (RPL40)
Ubiquitin system [BR:
olu04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
OSTLU_16428 (RPL40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Ribosomal_L40e
Rad60-SLD
Ubiquitin_2
Rad60-SLD_2
DUF2604
Plexin_RBD
TBK1_ULD
Ubiquitin_5
Dsc3_N
UBL_UBAC1
HATPase_c
Motif
Other DBs
NCBI-GeneID:
5003285
NCBI-ProteinID:
XP_001419120
JGI:
16428
UniProt:
A4S1B1
LinkDB
All DBs
Position
8:join(289719..290011,290267..290345,290446..290460)
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AA seq
128 aa
AA seq
DB search
MMMFANAVTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGIIEPSLVVLAKKTNADRAVCRKCYARLPPRATNCRKKKCGHTNQ
LRLKKKLK
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgttcgcgaacgcagtgacgggtaagaccatcaccttggaggtggagtcctcg
gacaccatcgacaacgtgaaggcgaagattcaagacaaggagggtatcccgccggatcag
cagcgtttgatctttgcggggaagcagctcgaagacggtcgcacgctggcggattacaac
atccaaaaggagtctacgctccacttggtgttgcgcttgcgtggtggtatcatcgagccg
tccctcgttgtgttggcgaagaagacgaacgcggaccgggccgtgtgccgcaagtgctac
gcccgccttccgccgcgtgcgacgaactgccgcaagaagaagtgcggtcacaccaaccaa
ttgcgtcttaagaaaaagttgaagtaa
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