Ostreococcus lucimarinus: OSTLU_18495
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Entry
OSTLU_18495 CDS
T01029
Name
(RefSeq) predicted protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03022
Basal transcription factors
olu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OSTLU_18495
09124 Replication and repair
03420 Nucleotide excision repair
OSTLU_18495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
olu03021
]
OSTLU_18495
03400 DNA repair and recombination proteins [BR:
olu03400
]
OSTLU_18495
Transcription machinery [BR:
olu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
OSTLU_18495
DNA repair and recombination proteins [BR:
olu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
OSTLU_18495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
5006026
NCBI-ProteinID:
XP_001421986
JGI:
18495
UniProt:
A4S914
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Position
16:complement(147825..149582)
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AA seq
585 aa
AA seq
DB search
MIDADVDDVVFHRCACASTVAGAKTRGEACVRTRTVTWTPADTGNLTGAKTVTLLSVTAH
QRNKPGSATASLRLVPDNDAKRALVLTFDAESDRDGLSDAIKAQIRKLEEEMKGVPSAAE
LEARSQLLKTNVEIAQLYEETVKAGVISNEDFWEARRNLFSDVVARKATGQKHGIENTLD
GDLKGARDGMSDTVTCNLTNEKMHRIFAERPSVREAFLNNVPKKMTEREFWTRFLRSEYF
KQMRAGAPPQGEEEAADLALFARKPPDATTVKAQIKAIEPGVNLKADLDDGLGEGYGLLR
DGSRDDRRPKEAGPLPEVFLELNHHAAVVLRGQPQVNIVDARTAAIAARDHEKSAESARI
GFEEPDYSIDDLAAPKPAAPPKELKIRDSHQYFSSIAEEPVVSKPSKTHVVIEPFKEAVT
SALSTLQHPEKKQKRALDPDIALQVLKEVTQSLAKVEDLSAQFASQQSFSNADDVAAFPE
NVNEQLRRSAATGGELLRQFWMSTPMITSVRWEKATKVCKSVEILYDKLEGVKSSLPSAH
RHIASQRLRPLLGAFDSALTFYDDEKTRRPQAYADFEKTATQENS
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgatcgacgccgacgtggacgacgtcgtcttccaccgctgtgcgtgcgcgtccacggtg
gctggggcgaagacgcgcggtgaggcgtgcgtgcgcacgcgcacggtgacgtggacgccc
gcggataccgggaatctcaccggtgcgaagaccgtgactttgctaagcgttaccgcgcac
caaaggaataaaccgggtagcgccacggcgagcctgaggttggtgccggacaacgacgcc
aagcgggcgcttgtgctgacgttcgatgcggagagcgacagagatgggttaagcgatgcg
ataaaggcgcagataagaaaattagaggaagagatgaaaggcgtgccgagcgcggcggag
ctggaggcgcgaagccagttgctgaagacgaacgtagagattgcgcagctgtacgaggag
acggtgaaagccggagtgatcagcaatgaagacttctgggaagcacgtaggaatttattc
agcgacgtagtggcgagaaaagcgactggacagaaacatggaatcgaaaatacgctagat
ggcgatctcaaaggcgcacgcgatgggatgtcagacacggtgacgtgtaacttgacgaac
gaaaagatgcacagaatcttcgccgaaagaccttcggtgcgcgaagcatttttgaataat
gtgccaaaaaagatgacagaacgcgagttttggacgagattcttacgatcggagtatttc
aaacagatgcgcgcgggagcaccaccgcaaggagaagaggaagctgcagatttggctctc
tttgcgcgaaaaccaccagatgcaaccacggttaaggcacaaatcaaagcgatcgagccc
ggtgtgaacttaaaagcggacctcgatgacgggctcggagagggatatggtttgctacga
gacggctctcgagatgatcgccgaccgaaagaagctggtccgttacccgaggtattcttg
gagctcaaccatcacgccgccgttgtgcttcgaggtcagccgcaagtgaacatcgtcgat
gctcgcaccgcggcgatcgccgcaagagatcatgaaaagagcgcagagagcgcgagaata
gggttcgaagagcccgattactcgattgacgacctcgccgcaccgaagcccgcggcgccg
ccaaaggagctcaaaattcgtgattcgcatcaatacttttcatctatcgcggaagaaccc
gtggtgagtaagccttcgaagacgcatgtcgtcatcgaaccgttcaaagaggccgtgacg
tcggctctgagtacgctccagcatcccgaaaagaagcaaaaacgcgcattggatcccgac
atcgcactgcaagtgttgaaagaggtcacgcaatcactcgctaaagttgaagatttgagc
gctcaatttgcgtcacagcaaagttttagtaacgctgatgatgtggctgcgtttcctgag
aatgtgaacgagcaactgagacggagcgcggcgactggtggggagctgctacgtcagttc
tggatgtccacgccgatgataacgtctgtgcgatgggagaaagcgacgaaggtctgcaaa
tccgtcgagatcttgtacgataaactcgaaggagtgaaaagttcgctcccttccgcccac
cgacatatcgcttctcagcgccttaggccgctgctcggtgcgtttgattctgcgttgacg
ttttatgatgacgagaaaactcgtcgtcctcaggcgtacgctgactttgagaagacagcg
acgcaagaaaattcatag
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