Ostreococcus lucimarinus: OSTLU_193
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Entry
OSTLU_193 CDS
T01029
Name
(RefSeq) predicted protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSTLU_193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_193
03012 Translation factors [BR:
olu03012
]
OSTLU_193
Enzymes [BR:
olu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OSTLU_193
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
OSTLU_193
Translation factors [BR:
olu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
OSTLU_193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_19
AAA_22
ATPase
ResIII
Cas3-like_C_2
AAA_16
Motif
Other DBs
NCBI-GeneID:
5004564
NCBI-ProteinID:
XP_001420320
JGI:
193
UniProt:
A4S4T0
LinkDB
All DBs
Position
11:join(<373504..374334,374368..375476,375555..>376047)
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AA seq
811 aa
AA seq
DB search
RKLLELELAKESTKEWLGMQEIRRKLPAHNLKSVVLEAIESSNAAVVSGATGCGKTTQVP
QFIFEEAIRAGKAGDTSIIITQPRRLSAIAVAERVANERCERIGDTVGYSIRLESKQSEK
TRMLFCTTGILLRRLQTDPNLTGVSHVVVDEVHERDLLSDFLLVILRSLAARRSDFHLVA
MSATVNADLFKNYFESHLKTTCPVVEIPGRTFPVAEYRLEDAIEATGYVCEPDGEFALGV
EQSRGGRIFKMAGGGGARGAALREAVEESFERSAMSEYSETTWKSLQVIDEEKINYELME
LLVALIADEYEEGAILIFLPGMAEIRTLHDRLRANLKDSESRFLLIPLHSTLSSEEQRLT
FNKAPPGKRKVVMATNIAETSITIDDVVFVIDSGRVRETQYDPVSRMSALVTAWCSKASS
RQRRGRAGRVREGYCFHLYSTKTEATVLADFTTPEILRTPLDALCLQIKILGLGDIRKFL
SMAIEPPPEGAIASALKSLHELDAVDSKDELTALGHHLAELPVDARLGKMMLYGAMFSCL
DPILTIAAGVGFRSPFLAPMDKRDEADAAKRKIAAQASDHLTLVRAYAGWIHARAKGRGF
ERDYLSKLFLSGQTLKQISEMRQQYTDLLDQIGFLRSGAGALGAVSAVNAGNESLVRAVI
CAGLYPNVALASAPAKTDDGRARSRYPTSSVAVRTKHDTDVHMHPTSVCYGMSPSVDSRF
LLYHEKVRTTKVYIRDATAVGSYPLLLFGGKIKINHERSSATCDNWINFRAAPRVAVLFK
HLRAELDALLMEKIASPDMDISHRRDVVKSI
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
cgcaaactgctggagttggaactcgcgaaggaaagcacgaaagagtggcttggtatgcaa
gaaattcggcgcaaacttccagctcacaatttgaagagtgtcgtgcttgaagcgattgag
agctccaatgcggctgtagtgagcggcgcaaccggttgcgggaagacaacacaagttcca
cagtttatattcgaagaagccattagggcgggcaaggctggagatacgagcatcatcatc
acgcaaccgaggcgtctttcggccatcgcggtcgccgagcgcgtcgcgaatgagcgttgt
gaacgcatcggtgacaccgtcggctacagcattcggttggaaagcaagcaaagcgagaaa
acgcgaatgctgttctgtacgactggtatcctcctccgacgtttacagactgatccgaat
ttaactggcgtatcgcacgttgtcgttgatgaggtccatgagcgtgatttactgagtgat
ttcttgctagtcattctccgatcactcgcagcgaggaggagtgattttcatctcgtggcc
atgtccgctacggtgaacgccgacttgtttaaaaactatttcgagtcgcacctgaaaaca
acgtgtccagtcgtggagatacccggtaggacgtttcccgtggcggaatatagattagag
gacgctatcgaagccacgggctacgtgtgcgagcccgatggcgagttcgcgctcggcgtc
gagcagagccgcggcgggaggatttttaagatggccggaggtggcggcgctcgcggggcg
gcgcttcgcgaagccgttgaggagtcgttcgaacgttctgcgatgagcgagtacagcgag
accacttggaagagcttgcaagtcatcgatgaagagaagatcaattacgaattgatggag
ctgctcgtagcgctcatcgcggacgagtacgaggaaggagcgatattgatcttcttgcca
gggatggcggaaattcgaacgcttcatgatcgacttcgtgcgaatttaaaagattcagag
tcgcgatttttgctcatccctttgcactcgacactgagttctgaagagcagcgcttaacg
ttcaataaagctccaccgggaaagcggaaagtcgtcatggcgacgaacattgcggagacg
tcgatcacgattgacgacgttgtcttcgttatagacagcggtcgcgtgcgcgaaacacaa
tacgatccggtatcgagaatgtcggctctcgtcaccgcttggtgcagcaaggcgagtagt
cgacagcgtcgtggtcgggccggtcgcgtacgcgaaggctattgctttcacctgtacagc
acaaagactgaagcgaccgtgctggcggactttacgacgccagagattttgcgcacgccg
ctcgacgcgctgtgtttacagatcaagattctaggtcttggagacattcgcaagtttttg
tccatggccatcgagccaccgcctgaaggcgccatcgcgtcggcgctgaaatctttacac
gaactcgacgcagtggactcaaaggatgaactcaccgcgctcgggcatcatctcgctgaa
ctcccagtcgacgctcggcttggaaaaatgatgctatatggtgcgatgttttcgtgcttg
gatcctattctcaccattgccgccggtgttgggtttcgctccccctttttagcgccgatg
gacaagcgcgacgaggccgacgcggcgaagcgcaaaatcgccgcacaagcaagtgaccat
ctcacgctggtgcgagcatacgctggttggatccacgcgagggccaagggtcgtggtttc
gaacgggactacttgtccaagctgtttctctccggacagacgttgaaacaaatttcagag
atgcgacagcagtataccgatttgttggaccaaattggatttttgcgatccggtgcgggc
gctctcggggccgtttctgctgtgaacgcggggaacgagtcactcgtgcgtgctgtcatt
tgcgctggtctttatccaaacgtcgcgttggcgagcgcgcctgcgaagacagacgacggt
cgcgcgcggtcgcgctaccccactagctccgtcgccgtgcgcaccaagcacgatacggac
gtgcacatgcatccaacatcagtgtgttacggcatgtcgccaagtgtcgacagccggttt
ctgctctatcacgaaaaagttcgtacgaccaaggtgtacattcgcgacgccaccgccgtc
gggtcgtacccgctgttactcttcggcggtaaaatcaaaatcaatcacgaaagatcgagc
gcgacgtgcgataattggataaattttcgcgcagcacctagagttgcggtcctcttcaag
catttacgcgccgaactagacgcgttgctcatggagaagattgcttcacccgacatggac
atttcgcacagacgcgacgtcgtgaaatccata
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