Ostreococcus lucimarinus: OSTLU_26149
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Entry
OSTLU_26149 CDS
T01029
Name
(RefSeq) predicted protein
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03020
RNA polymerase
olu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OSTLU_26149
09124 Replication and repair
03420 Nucleotide excision repair
OSTLU_26149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
olu03021
]
OSTLU_26149
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_26149
03400 DNA repair and recombination proteins [BR:
olu03400
]
OSTLU_26149
Transcription machinery [BR:
olu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
OSTLU_26149
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
OSTLU_26149
DNA repair and recombination proteins [BR:
olu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
OSTLU_26149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHM7_cyt
RRM_1
RRM_7
Motif
Other DBs
NCBI-GeneID:
5004150
NCBI-ProteinID:
XP_001420141
JGI:
26149
UniProt:
A4S3R7
LinkDB
All DBs
Position
10:complement(308322..311564)
Genome browser
AA seq
1080 aa
AA seq
DB search
MATKLNEDAVRADADAKMKSDRIETLARERQREEANASDDEDEDEDEGFRMKRKEEDAAV
PAYTWTATLRRRVRELEEGADVEAREAGRLRLDEALGAADDEDAGDVSTFVNGAPTVITK
MKSRINSMNAPTGPTGVLVKTAHAEDKPMQQVVEDSYYKAVMSEKLPAYKAPRRHIARLE
NLESAVLDKEGNQLPLWKSTSDDLDVLGPGISLWFAQLKTLGKTFVYITMLASVALSHYV
YIANKSSSVEVEPEITTTLGVTAAGVYASAYGIDIRTIMAVLSCLDVCMVLMFMLITAIL
SRRIRSFVVRVDEALLTLADYSLQVTGLPVDATEDEVREHFEEFGPVADVVIARSYGAVL
RARIHRARLFKRAEQLKSELSAIRHTLKKRGEDYNANYAFKRKWKQFYKARDKMNALKEK
IEQRMLEPFNIVYAFITFEQESDKMTCLDEYAPYFNFFRSKRTRFRVHPREDGKGDAFHY
LRVTQAVEASDIMWENMANVGWKQYFVRRAITTIAILGLLIGNIILVVFATDWVKSGGRL
LVNCGDLFASGASDNMYCPAIWNINENSLETDLGLISNVNFRKQVESSDCNPFIESAMWS
YDMTQYSPYYEAVGAYSSLSVSSANAYGYSGGVWNGGMDASTKADECAAKICYDCMCESA
IRSGRVTTICKDYFYDQLLIFGFEVGRLSVVALTSMLLLWTSGKFALFERHKTVSATERT
TSRFAFFTLITNALILPLLVNIEIKGFSGFPILFRGSYEDVTLDWYALVMRSLMITTFIN
ASWFGPSRLVQMWLTQLWRYWTARWCTTQYNLNRLYQRPKFTLAERYGQCMTVIFTAIVL
FAAAPVLVPVAAFYCFLAYWSDKTMILRHSRYPSLYDHKLARQFMSYAPLACLAHFAFSS
WAFSQWDIPSYFLTGLDGWAEEIYDQRDSDFWTVRANMTKYEQLDFKERFYRVNGLIQLI
PLMAYFIYLLIKAFFSSVGNTALYLLGCKGLGASEWKADVQFSNFSEARDNMLKDGDHET
SLSGLPSYRVQDNPEYTALFPEAKQVHGAFISHDDAERATDAPAPASTPKWANRVASPRK
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaaattgaacgaggacgccgtgcgcgcggacgcggacgcgaaaatgaaatca
gacaggattgaaacgctcgcgagagaacgccaacgcgaggaagcgaacgcgagcgacgac
gaagacgaggacgaagacgaagggtttcgaatgaagcgaaaagaagaggatgcggcggta
ccggcgtacacgtggacggcgacgctgcgacgacgggtgcgagaactcgaggagggcgct
gacgtcgaggcgcgagaggcggggaggcttcggttggacgaggcgctcggcgccgccgac
gacgaagacgccggtgatgtcagcacgtttgtgaatggcgctccgacagtgattactaaa
atgaagagtcgaatcaattcgatgaatgcgccgacgggcccgaccggtgtgctggtgaag
accgcgcacgcagaggataagccgatgcagcaagtcgtggaagactcgtactacaaagct
gtcatgagcgaaaagctcccggcgtacaaagcaccgcgccgacacatcgcgcgattggag
aatcttgagtctgcggttttagacaaagagggcaaccagcttcctttgtggaaatcgacg
agcgacgatctcgacgttctcggcccgggtatcagcttgtggttcgctcagttgaagacg
ttgggtaaaacgtttgtctacatcacaatgctcgcgtctgtcgcgctctcgcactatgtg
tatatcgccaataaaagtagtagcgtcgaggtagagccggaaataacgacgacactcggt
gtcacggcggcgggcgtttatgcttcggcgtatggtatagatattcgtaccatcatggct
gttctctcgtgcttggacgtttgcatggttttgatgttcatgctcataacggcgatttta
tccagacgtattcgaagctttgtcgtccgcgttgatgaagctttactcactttggcggac
tattcgctccaagtgaccggcttgccagtagacgcgacggaggacgaagtgcgcgagcac
tttgaagaattcggacccgtggcagatgtcgtcatagctcgttcgtatggtgcagtttta
cgcgcgcgaatacatcgtgcgcgcttatttaaacgtgcagaacagctgaaatctgaactg
agcgcgatccgtcacacgctgaagaagcgcggcgaggattacaacgcaaactacgccttc
aaacgcaaatggaaacaattttacaaagcacgcgataagatgaacgccttgaaggaaaaa
atcgagcagcgtatgctcgagccttttaacatcgtttacgctttcatcacgtttgaacaa
gagtcggacaaaatgacatgtctggacgagtacgctccgtactttaattttttcagaagt
aagcgaacgagatttcgcgtccaccctcgcgaagacggcaagggcgacgcatttcactac
ttgcgggttacccaagccgtggaagcctctgatatcatgtgggaaaatatggctaacgtg
ggttggaaacaatacttcgtacgacgggcgattacaacgattgctatccttggtcttctc
atcggcaacattatccttgtcgtttttgccaccgactgggtaaaatccggcgggcgatta
ctcgtcaactgtggcgacttgttcgcctcgggggcttctgataacatgtactgccctgcg
atctggaacatcaacgaaaacagtctcgaaaccgatttgggattgatttcgaacgtcaac
ttccgaaaacaagtcgagagctcagactgcaacccattcatcgagtcggcaatgtggtcg
tatgacatgacgcaatactcgccatattacgaagccgtgggcgcgtactcttcattaagc
gtctctagcgctaacgcttatggatattctggtggagtatggaatggaggcatggacgcc
tctacgaaggccgatgagtgtgcggcgaaaatttgttatgactgcatgtgtgagagcgcg
atacggtcgggacgcgtgacaaccatctgcaaagactacttttacgatcaactactaatc
tttggtttcgaagtcggtcggctgtccgtcgtcgcattgacgtctatgctcttgttgtgg
acgtcgggaaagtttgcgctcttcgagcgccacaagactgtatctgccacggaaagaacg
acgagtcgttttgcgttcttcaccctcatcacgaacgccctgattcttccgttactcgtt
aacatcgaaatcaagggtttctcaggcttcccaatcttgttcagaggaagctacgaagac
gtgacgttggactggtacgcgctcgtgatgagatcgctcatgattactacattcatcaac
gcctcgtggtttggaccgtcgcgtcttgtgcaaatgtggctcacgcaactctggcgttat
tggacggcgcgatggtgcaccacgcagtacaacttgaatcgtctttatcaacgaccaaaa
tttacgctcgctgaacgttacggtcagtgtatgacggtgatatttaccgcaatcgttctc
ttcgcggccgctccagtgctcgttccggtggcggcgttctattgcttcttggcgtactgg
agcgacaagacgatgattttacgtcactcgcgctacccttcgctgtatgatcacaagttg
gcgagacagtttatgtcgtacgccccgctggcgtgcttggcgcacttcgccttctcatct
tgggcgttctctcagtgggacataccgtcctactttctcactgggttggacgggtgggcc
gaggaaatttacgaccaacgcgactccgatttctggaccgttagagcgaatatgaccaag
tacgaacagctcgacttcaaagagcgattctatcgcgtcaatggattgatccaattgatc
ccactcatggcgtactttatctacttgctcatcaaagccttcttctcgagcgtcggtaat
acggcgctctacttgctcggctgtaaaggcttgggagcgagcgaatggaaggctgacgtg
caattcagcaacttctctgaagctcgagacaacatgttaaaggatggtgatcatgaaact
tcactctctggtttgccgagttaccgcgtgcaggacaatccggaatacacggcgttattc
ccagaggcgaaacaggtgcacggcgcgttcatcagtcacgacgacgccgagcgcgcgacc
gacgcccccgcgccggcttcgacgcccaaatgggccaatcgagtcgcatcaccccgcaag
tga
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