KEGG   Ostreococcus lucimarinus: OSTLU_26958
Entry
OSTLU_26958       CDS       T01029                                 
Name
(RefSeq) predicted protein
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
olu  Ostreococcus lucimarinus
Pathway
olu03013  Nucleocytoplasmic transport
olu03015  mRNA surveillance pathway
olu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:olu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OSTLU_26958
  09122 Translation
   03013 Nucleocytoplasmic transport
    OSTLU_26958
   03015 mRNA surveillance pathway
    OSTLU_26958
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:olu03019]
    OSTLU_26958
   03041 Spliceosome [BR:olu03041]
    OSTLU_26958
   03009 Ribosome biogenesis [BR:olu03009]
    OSTLU_26958
   03012 Translation factors [BR:olu03012]
    OSTLU_26958
Enzymes [BR:olu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     OSTLU_26958
Messenger RNA biogenesis [BR:olu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     OSTLU_26958
   mRNA cycle factors
    Stress granule specific factors
     OSTLU_26958
Spliceosome [BR:olu03041]
 Complex C
  Other components
   EJC/TREX
    OSTLU_26958
Ribosome biogenesis [BR:olu03009]
 Eukaryotic type
  90S particles
   Helicases
    OSTLU_26958
Translation factors [BR:olu03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    OSTLU_26958
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_30 AAA AAA_22
Other DBs
NCBI-GeneID: 5004855
NCBI-ProteinID: XP_001420866
JGI: 26958
UniProt: A4S618
LinkDB
Position
12:complement(493689..494903)
AA seq 404 aa
MAKDAGKRTATSYDADEKISFETSEGIEPRATFDAMGIREDLLRGLYSYGFEKPSAIQQR
AVVPIISGRDVIAQAQSGTGKTSMISLALCQMLDTTSREVQGLVLSPTRELAVQTEKTAL
SLGNFMNVQVHACIGGRSIGDDIRKLDYGCHIVSGTPGRVFDMIKRRNLRTRGIKILVLD
EADEMLNKGFKEQIYDVYRYLPPETQVVLVSATLPNEVLEMTSKFMTDPMRILVKRDELT
LEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKKKVDWLTEKMRQNNFTVSAM
HGDMPQKEREEIMNEFRGGTTRVLITTDVWARGIDVQQVSLVINYDLPGNRENYIHRIGR
SGRYGRKGVAINFVKADDVRALRDIEQYYSTQIDEMPMNVADLI
NT seq 1215 nt   +upstreamnt  +downstreamnt
atggcgaaagacgcgggcaagcgaaccgcgacgagctacgacgcggatgaaaagatatcg
ttcgagacgtcggaagggatcgaaccgcgcgcgacgttcgacgcgatgggaattcgtgag
gatttgctgcgcgggctgtactcgtacgggttcgaaaagccgagcgcgattcaacagcga
gcggtggtgccgataatatccggacgggacgtgatcgcgcaggcgcagagcgggacgggg
aagacgtcgatgatatcgctggcgctgtgtcagatgttggacacgacatcgagggaggtg
cagggattggtgctgtcgccgacgcgagagttggcggtgcagacggagaagacggcgctg
tcgctggggaattttatgaacgtgcaagtgcacgcgtgcatcgggggacggtcgatcggg
gatgacattcgtaaattagattacggctgtcacatcgtcagtgggacgccgggacgggtg
ttcgatatgataaagcggcggaatttacgcacgcgcgggattaagattttggtcctcgac
gaggcggatgaaatgttgaataaagggttcaaggaacagatttacgatgtgtatagatac
ttgccgccggaaacgcaggtggtgttggtgagcgccacgctgccgaacgaagtgttggag
atgacgagcaagtttatgacggatccgatgcgcatcttggtcaagcgcgacgaattaacg
cttgaaggtattaagcagttcttcgtcgccgtcgaacgcgaggaatggaagttcgacacg
ctttgcgatttgtacgacacgctgacgatcacgcaagcggtgatcttttgcaacacgaag
aagaaggtggattggctcacggagaaaatgcgacagaacaacttcacagtctccgccatg
cacggcgacatgcctcaaaaggagcgcgaggaaatcatgaacgagttccgaggcggtacg
acgcgcgtattgatcacaaccgacgtctgggcgcgcggtatcgacgttcaacaagtgtct
ttagtcatcaactatgatcttccgggcaaccgtgaaaactacatccatcgcatcggtcgc
tcggggcgatacggacgcaagggcgtcgctatcaacttcgtcaaggcagacgacgtgcgt
gcgctcagagatatcgaacagtactattccacgcaaatcgacgaaatgcccatgaacgtg
gccgacttgatttag

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