Ostreococcus lucimarinus: OSTLU_27227
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Entry
OSTLU_27227 CDS
T01029
Name
(RefSeq) predicted protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OSTLU_27227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
olu03041
]
OSTLU_27227
03009 Ribosome biogenesis [BR:
olu03009
]
OSTLU_27227
Enzymes [BR:
olu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OSTLU_27227
Spliceosome [BR:
olu03041
]
Complex A
U1 snRNP components
U1 related factors
OSTLU_27227
Complex B
OSTLU_27227
Ribosome biogenesis [BR:
olu03009
]
Eukaryotic type
Pre-60S particles
Helicases
OSTLU_27227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
5005002
NCBI-ProteinID:
XP_001420996
JGI:
27227
UniProt:
A4S6S8
LinkDB
All DBs
Position
13:415789..417147
Genome browser
AA seq
452 aa
AA seq
DB search
MDAVRRAGDADASTSATVRDGEVFSKNLYFEHPSTTARSARATEDAMRARGVRVVRGADV
PKIVTTFEEASFPAYVMDDLKERGLATPTPCQCQAWPIALSGRDLIAVAETGSGKTLAYV
LPAIVHVNAQPVLEKGEGPIALVLAPTRELASQIELEVAKFAASSEIKHACVTGGVPKGP
QIKALKSGGSEICVATPGRLIDFLDGGQTNLRRTSFVVLDEADRMLDMGFEPQIRRIIAQ
TRCDRQTLLFTATWPVEVREVAREFIRNDPVEMRVGGAGDGLLASKNVEQIVHIVEDAEA
KYAKLMDILEEEMDGSSILVFVETKALVDQLTRRLRSEGWPALGLHGDKEQKERDWVLEE
FRAARSPIMISTDVASRGLDVVGVKLVVNHDFPKSVEEYVHRIGRTGRAGRKGKSHTFFS
ILRDGKHARELAHVLRASNQSIPRALEGVVAD
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgtgcgccgcgcgggcgacgcagacgcgtcaacgagcgcgacggtgagggat
ggggaggtgttttcgaagaatttgtactttgagcacccgtcgacgacggcgcgaagcgcg
agagcgacggaagacgcgatgcgagcgcgcggcgtgcgcgtggtgcgaggggcagatgtg
cccaaaatcgtgacgacgttcgaggaggcgtcgttcccggcgtacgtgatggacgatttg
aaggagcgcggtttggcgacgccgacgccgtgtcagtgccaggcgtggccgatcgcgctg
agcggacgagacttgatcgcggtcgcggagacggggtctggaaagacgttggcgtacgtg
ttacccgcgatcgtgcacgtgaacgcgcagccggtgctggagaagggggaggggccgatc
gcgttggtgctcgcgccgactcgagagttggcgagtcaaatcgaactcgaggtcgccaaa
ttcgcggcgtcgagcgagatcaagcacgcgtgcgttaccggtggcgtcccaaaaggtccg
caaataaaagcgttgaaatcaggagggagcgagatttgcgtcgcgacgccgggccgcctg
attgattttttggacggcgggcagacgaatttgcgacgaacgtcgttcgtcgtcctagac
gaggcagatcgaatgctcgacatgggtttcgagccgcagattcgtcgaatcatcgctcaa
acgcgctgcgatcgccaaacgctcctgttcaccgcgacgtggccggtggaggtgcgagaa
gtggcgagagagtttattcgcaacgacccggtggagatgcgcgtcggcggcgcgggcgac
ggtttgctcgcatcgaaaaacgtcgaacaaatcgtgcacatagtcgaagacgcggaggca
aagtacgctaaactcatggatattttagaagaagagatggacgggagctcgatcttggtc
ttcgtcgagaccaaggcgctcgtggaccagctgacgcgtcgactccgttcggagggttgg
cccgcgctcggcttgcacggcgacaaagaacagaaagagcgcgactgggtcctcgaagaa
tttcgcgccgcgcgatcgccgatcatgatcagcaccgacgttgccagtcgcggcttggac
gtcgtcggcgtgaagctcgtcgtcaaccacgactttccgaagagcgtcgaggaatacgtc
cacagaatcggtcgcaccggtcgcgccggacgcaaaggcaaatcgcacacgttcttctct
atcttgcgcgacggcaagcacgcgcgagagctcgcgcacgtcttacgcgcgtcgaatcaa
tcgatcccgcgcgctctcgagggcgtcgtcgccgactga
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