Ostreococcus lucimarinus: OSTLU_27846
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Entry
OSTLU_27846 CDS
T01029
Name
(RefSeq) predicted protein
KO
K12600
superkiller protein 3
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSTLU_27846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_27846
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
OSTLU_27846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_11
TPR_1
TPR_8
TPR_17
TPR_16
TPR_14
TPR_CcmH_CycH
TPR_2
TPR_7
TPR_12
TPR_19
TPR_9
BTAD
Motif
Other DBs
NCBI-GeneID:
5005728
NCBI-ProteinID:
XP_001421619
JGI:
27846
UniProt:
A4S8G8
LinkDB
All DBs
Position
15:275850..279911
Genome browser
AA seq
1353 aa
AA seq
DB search
MSAKASLMKTLKAANEALKAGDAASARGLAKEAIEADGDAYEAWVMDGKAANALGALDDA
VKSYERAIEIRSEHPAAYQGLNETFAAKGDVVGRLRALRALVDAHRASGKVDKLVEFLKQ
ACACAWENAQWSRVIEFCGEMGEFRTGEVDEVTRVESVKRACDGALALRDARAAEAGEAA
VQMLRSKTIASKAEEEAVRKLGARASHAVDDEDLATTLRAWLSEDVANASYDSRTHAAEL
DRLDARLAAALSGSVDCDFDVRACAREALTEATVLIDRWGEVVIDLVEPLCVEIVAALEL
GLDCEEEGWDDNEVEDEDEAKVIRLLERVLALRANTIASGWLALRDSRRSGAFTHSCRPA
TPPREDARGLLTPELRDEIVTTLNRDDESKVSHASAAIGWLALAESMLVGGERADVHALQ
AATTAMKIMREDITTDALPKMSRRVLMVHAEAMLRVGMFQEARAAFVVLEGPRAARGLAT
YAFNAHPPDYERALQLLSDAAETYPNVRRVGVELGWLMTIAGSSERRAEGLETLERACGV
KSGEPLSTTTPADASARLGIARWRAQVSAAKGPGSAHEALLIGAAGDSAHRAAAFAHLGL
SCGASGDDARAQKCHARALALDAADPTSGPVAFTNALDANDDAKATSICRAALAVDSRCS
WAANRLAPMCARIGDHSGAIGALQVVLRVSPRNASAWEALGASYNSLGRHSAALKAFERA
MELSDEAGEGVRSYAASQTGHIYLALGSSADAIEAYDKALSDGVDHLAALFGSASAHSYY
AKGALRWGAPGRAAVSLKAATKAGKRAVEIMGDGATATVWKLLGDIHHLAAQVNDPALGK
DFTSMLAARTTEARSAVEAYGKALNLKPDRPGRWRDVVAALRLQTEIHKLSGDVAAAEAS
AAKAWERAAGYLRVAPGDPFAWFAAAAIDDPAVISDAVRTERKITALSRAVALNPTFAQA
WCALGRLYLSSGDVGEATLSLDSARIADPSSGDAWTATAALHIATGKLAEGRGAFRMAAA
LGAGAEADLGCALTACASGLTYAKDAYAAARRASESLPVDSTAAIALALCAECRGLFEEA
EDAAAHAVASLENVPALGGDPNVIRTVAEECRARVSQRRLDDSDSTASTSVDGDFENTLE
RAKLLVHARPGDLKMQDALTRVASCAPDHQTVVSALSACPPSSPNGDYRVQSSLARAAAA
CALNASTVVGDAEGSARANRFVARATMLDPSSTESLELLNIVLDRRKGIVREATQSEAHE
LHAALKSALTQSAAGDSASAEAAARAVVNREPITDAAQAAARLILASFLIERSRRDGDAK
PAKEAIKVLAKIPSEAGARVADLAAALADAVSG
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccaaggcgagcttgatgaagacgctcaaggcggcgaacgaggcgttgaaagcc
ggggacgccgcgagcgcgcgaggtttggcgaaggaggcgatcgaggcggacggggacgcg
tacgaagcgtgggtcatggatggaaaggcggcgaacgcgctcggggcgctcgatgacgcg
gtgaaatcgtacgagcgtgcgattgagatcagaagcgagcatccagcggcgtatcaaggg
ttgaatgagacgttcgcggcgaaaggtgatgtcgtggggcggttgcgcgcgttgcgagcg
ctcgtcgacgcgcatcgagcgagcgggaaggtggacaaactcgtcgagtttttgaaacaa
gcgtgcgcgtgcgcgtgggaaaacgcgcaatggtcgcgcgtgattgagttctgcggtgag
atgggcgagtttcgcacgggagaggtggacgaagtgacgcgcgttgagtcggtcaaacgc
gcgtgcgacggcgcgttggctttgcgcgacgcgcgcgccgccgaggcgggagaggcggcg
gtgcaaatgcttcgttcgaagactattgcgagtaaggctgaagaagaagctgtgcgcaag
ttgggtgcgcgagcgtcgcacgccgtggacgacgaagacttggcgacgaccctgcgagct
tggctgagcgaagacgtcgccaacgcgtcgtacgattcacggacgcacgccgcggaattg
gatcgactcgacgcccgtctggctgctgcgctttcgggatcggtcgactgcgacttcgat
gtcagagcgtgcgcacgtgaggcgctgactgaggctactgtactcatcgatcgatggggc
gaagtcgtcattgatctcgtcgagccgctgtgcgtggaaatcgtcgccgcgctcgaactc
ggtttagattgcgaagaagagggatgggatgataacgaggtcgaggatgaagatgaggcg
aaagtcatacgtttgctcgagcgcgtgctcgctttacgggcgaacacgatcgcgtcaggc
tggctcgcgctcagggactcgcgtcgaagcggcgcatttacgcattcatgccgtcccgcg
actcctcctcgagaagacgccagaggtttgctgacgccggagcttcgggacgaaattgta
accacgctcaatcgcgatgacgagtcgaaagtgagccatgcgtccgccgcaatcggctgg
cttgcgttggcggagtccatgctcgtcggcggcgagcgtgcggacgtgcacgcgcttcag
gccgcgaccacggcgatgaaaatcatgcgcgaagacatcacaacagatgcattaccgaaa
atgtcccgacgggttttgatggtgcacgctgaggctatgcttcgcgtagggatgtttcaa
gaggcgagggctgcgtttgtcgtgcttgaaggtccgcgagcggcgcgaggattggcgacg
tacgcgttcaacgcgcaccctcccgattacgagcgcgctttgcagttactctccgacgcc
gccgagacttaccctaacgtgcgacgcgtgggcgttgagctcggatggctcatgaccatt
gctggatcttcagagcgtcgagccgaggggttggagacgctcgagcgagcgtgcggcgta
aagtcaggtgagccgttgtcgacgacgacgcccgctgatgcaagtgcgcgactcggaatc
gctagatggcgcgctcaagtctcagcggcgaaggggccagggagcgcgcacgaggcgtta
ctcatcggcgccgcgggcgattcggcgcatcgcgcggcggctttcgcgcatctcggtctt
tcgtgcggtgcaagcggcgatgacgcgcgcgcgcaaaagtgtcacgcgcgtgcgctggca
ctcgacgctgcggacccgacatctgggcctgtggcgtttacgaacgcgttggacgcgaac
gacgacgccaaggcgacgtccatttgccgcgctgcgctcgccgtggattcgcggtgctcc
tgggcggcgaacagactcgcgccaatgtgcgctcgtatcggtgatcacagcggtgccatt
ggcgccttacaagtagtcttgcgtgtttctcctcgaaacgccagcgcctgggaagcttta
ggtgcgtcgtacaacagtctcggtaggcattccgccgcgctcaaagcattcgagcgagcg
atggagttgagcgatgaagcgggcgagggagttcgctcatacgcggcttcgcaaacagga
cacatttatttggcgctaggatcctccgcagacgctattgaggcttacgacaaagcacta
agcgatggcgtcgatcatttagccgccttgtttggttcggcgagcgctcactcgtattac
gccaaaggcgcgttgcgctggggcgctccgggacgcgccgcggtatcactaaaagccgca
acaaaagcagggaaacgcgcggtagaaatcatgggcgacggcgccaccgcaacggtttgg
aagttgctaggggacattcatcacctcgcagcgcaagtcaatgatccagcgctcgggaag
gacttcacatccatgcttgccgcgcgaacgaccgaagctcgcagcgcggtcgaggcgtac
ggaaaggcattgaacctaaaacccgaccgtcccggtcgatggcgtgacgtcgttgctgcg
ctgcgattgcaaaccgagattcacaaactttcaggcgacgtcgcagctgcggaggcgagc
gcggcaaaggcgtgggaacgcgccgcgggctaccttcgagtcgccccaggcgacccgttc
gcctggttcgccgcggcagcgatcgatgatcctgccgtaatttcagacgctgtgcgcact
gagcgaaaaatcaccgctttatctcgcgccgtcgcactcaatcccacgtttgctcaagcg
tggtgcgcgctgggccgtttgtatctatcatcgggcgacgtcggcgaggcgactttatcg
cttgacagcgcgcgtatcgccgacccaagcagtggtgatgcgtggacagcgactgcagct
ttgcacatagccactggtaaattagctgaaggacgcggcgcgttccgtatggcggcggcg
cttggcgccggcgcggaggcagatttgggatgtgcgctcacggcgtgcgcttctgggttg
acttatgccaaagatgcttacgcggctgctcgtcgggcgagtgaaagtttacccgttgat
tctacagcggcgatcgcactcgccctttgcgccgaatgccgagggttgtttgaggaagcc
gaagatgcagcggcgcacgcagtggcgtcgctcgaaaacgtccctgcgctgggcggcgat
ccaaacgtcatacgaaccgtcgcagaagaatgccgcgctcgagtgtcgcaaagacggttg
gacgattccgactcaaccgcatccacgagtgttgatggagactttgagaacacgcttgaa
cgcgccaaacttttggtgcatgcgcgacccggagatttgaagatgcaggacgctttgacg
cgcgtggcgtcgtgcgccccagatcaccaaacagtcgtttcggccctctctgcatgccca
ccatcttcaccaaacggtgactatcgcgttcaatcttcgctcgcgcgcgctgcggcggcg
tgcgccttgaacgcgtcgaccgttgtcggcgacgccgagggctcggctcgagccaatcga
ttcgttgcgcgcgcgacgatgctcgatccatcctctacagagtccctcgaactgctcaac
atcgttctcgatcgacgtaagggcatcgttcgagaagccacgcaatcggaagcacacgag
ctccacgccgcgctcaagtctgccttgacgcagagcgccgccggcgattcagcctccgcc
gaagccgccgcgcgcgccgtcgtcaatcgcgagcccatcaccgacgccgcgcaagccgcc
gctcgtctcatcctcgcttcgtttctcatcgaacgctctcgacgcgacggcgacgccaaa
ccggcgaaggaggcgatcaaggtattggcgaagattccatccgaagccggcgctcgagtc
gccgatctcgcggcggcgctggccgacgccgtgtcgggatga
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