Ostreococcus lucimarinus: OSTLU_28283
Help
Entry
OSTLU_28283 CDS
T01029
Name
(RefSeq) VIC family transporter: calcium ion channel
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
olu
Ostreococcus lucimarinus
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
olu04040
]
OSTLU_28283
Ion channels [BR:
olu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
OSTLU_28283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
FAM176
Trypan_PARP
Motif
Other DBs
NCBI-GeneID:
5006167
NCBI-ProteinID:
XP_001422214
JGI:
28283
UniProt:
A4S9Q8
LinkDB
All DBs
Position
17:complement(143164..148392)
Genome browser
AA seq
1742 aa
AA seq
DB search
MCVVGSSAIVAVVKPARDGAAEATAATAANYVVAGVFAAEALVKSVALGFALGEGAYLTT
NWHRFDFTLVVLSLMLMPIGGSQVVTVRLLRSLYAFKLFAKYRSARLAMKTIARALPLLG
DVLLFLLWFLIFFAVSGVTMFGGRMTGRWYGTPPDQATNASYVFPVGTGSETCANLVGAW
MGALALGAEGTYPNEYDSTCNYKEWNTNRSATEWCCDSGIEPYDGFLSFANAGRSSIVAL
NGMTIDGWNELLNPTAYAVGYPAAFLWFIVVVLMGGFFMMELFTSVICATLTQMGIRDED
EAPEDSSQAKTEKVLESLDDETALSRGESDGRGNNFHKNGERFFRLFVSDATRQMCWKIA
EDRRFDASITVVIIFNTILMMSQHHAASSGFVKASEILEYVFLGCFAVEMAIKHIGYGFR
GYWSSKQNVVDGLIVFTGVISTAVTSQGVSASFIRLLRIGRALRTFRVIRNNREFRKIIS
SAYLGFQDMWPFLIVWLLFQVIFAIYGFQLFTGLGALDDERLTFRNFLRSALTLFVVATG
EDSFVVAWNTMVASGNDVVVLYTIAWIFLSTVILSLVLGILIDSCSLVDIEEEQRAQDEL
EDGRLRSAIERAGDIVLDPNRKAKRVLQNMTFAANAFRSTLRKHARSKRGDSIKDRGDTS
FKFNLLDAARKQECAEQAIQSQAKKSLKTADGSTPTAISSVLAALKPPDHGGKLAQVKKD
RLRKQTVEDVAACRIFLDSIGFKLKTPAQVLTISEHALKEAQLRLTPKFVEYQDYQDKAF
GVTSSIKSSIRHSMTKRFAAQNNRLSIEDKSKEDEHVVFDAHGPWAATITRSISSRVKKQ
SSEIPGVIVTKDGDFIPLYDDTIPVERYKYLVHKIVSHNLFENAILCMIIAGSVLLATET
KTWPVAGSHTAKVYTAVDITFTTLFGAEMVLKLFAYGLYERPTAYLKNSFNILDGVVVFT
SIISLTAADDGSGSVRALRLLRIMRPLRSIRRFPGLRLVVNTVLSAIPAVSYVCFIGLVS
MSIFALLGMELFMGKFWSCRVVNDASSYTTQATCEAAGGKWRNAKFNFDNFGAALLSTFL
LHAGDDWQEIMWVAMDTTGVGTGLKTDNNQAAALYFVLTVAIGNFFWLNLLVTALVDNFN
KMASQDKLTFVTPAQRRWQQAILRASTQDSEAWRRIVPPPGKSLWSRARLLAHHISKPKK
FAYFILVVVCANLIELLTQTANMSSSAEYAHFCMSIAFTAVYSLEMMLLLMAQGRTRYFR
NYWNWLDAFVVVVSIVQAIGQSLNAGGVMNYLQLVRLLRLLKLVKAHSGLRSLFNTFIMS
LPGVGNVAALSSLAIFSYAIMGVSLFGDETGPFEGGVLSKYSNFQRFTTACSSLIGVYTG
GWVGTFGEVYQTEACLRTEAPFMLESSIDCSYNAAAVPYFISFVIISIFLLGNLFVAIIL
ERFSVSADDEGLYDTEEVVEIIKHTIQLRRLAIRIKKKVVRSREPGGALFDASTKARSVI
ERFTHSAQEERAVVKGHRGGSVARDHVATLAAFETNGEQGNVVPGRNQSILDLAPETDVT
AEREVRPEPEPELELEPPEPLRGAAFFGENRFESRRAYASSTDADSDDDHYAFEMKDPSS
GRQPGLNTPNDGLSEREPSELAYSMGESYDAEESASDEDRFAQSSFSPESYRFNASGEEA
TRVHYARHSDYLYDFRDADDSPERRRKASSLLGSETSDDGATGGQTSDAVSDGEFAKLSF
RL
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgtcgtgggctcgagcgcgatcgtcgcggtggtgaaaccggcgagggatggcgcg
gcggaggcgacggcggcgacggcggcgaattacgtcgtcgcgggggtgttcgcggcggag
gcgctggtgaagagcgtggcgctgggattcgcgctgggcgagggggcgtacttgacgacg
aattggcatcggttcgatttcacgctcgtcgtgctgtcgttgatgttgatgccgatcgga
ggctcgcaggtggtgacggtgcgactgttgcggtcgttgtacgcgttcaagttgttcgcg
aagtaccgcagcgcgaggttggcgatgaaaacgatcgctcgagcgctgccgttgttgggg
gacgtgctgttgtttttgctgtggtttttaatattcttcgcggtgagcggcgtgacgatg
ttcggcggtcggatgacgggacggtggtacgggacgccgccggatcaagcgacgaacgcg
agctacgtgtttcccgtggggacggggagtgagacgtgtgcgaacttggtcggcgcgtgg
atgggcgctctcgcgttgggcgccgaaggaacgtacccaaatgagtacgacagcacgtgc
aactacaaggaatggaacacaaacagaagcgcgacggagtggtgctgtgattcgggcatc
gagccgtatgacggatttctgagctttgcgaacgctgggagaagttcaattgtcgcgtta
aatggaatgaccatcgacggttggaatgagttgctcaatcccacggcgtacgcggttggc
tatcccgcggcgtttctttggttcatcgtcgtcgttctgatgggtgggttttttatgatg
gaactctttacatccgtcatttgcgcgacgttgacgcaaatgggtattcgcgacgaagac
gaagcgcccgaagactcgagccaggcgaagacagagaaagtactagaaagcttggacgac
gagacggcgctcagtcgcggcgaaagcgatggacgcggaaacaactttcacaagaatggt
gagcgtttttttcgtctctttgtgtctgatgcaacgcgtcaaatgtgctggaaaatcgct
gaagaccgacgttttgatgccagcatcacggtggttattatatttaatacaattttgatg
atgtcgcagcatcacgcggcgtcgtcgggattcgtcaaggcttctgaaattttagaatat
gttttcctcggatgttttgctgtagaaatggcgattaaacacatcggatacggctttaga
ggatactggagctcaaagcaaaacgttgtcgatgggttgatcgtgtttaccggtgtcatc
agtacggcggtgacgagtcaaggcgtgagcgcgtcattcattcgtctcttgcgaatagga
agggcgctgcgaacgtttcgcgtcatcagaaacaacagagaatttaggaagatcatttca
agcgcgtatctcggtttccaagacatgtggccgtttttgatcgtttggctattatttcaa
gtcatatttgccatttacggatttcaactcttcaccgggttaggagcgctcgacgacgag
cgcttgacgtttaggaactttttgcgcagcgcgttgacgctgtttgttgtcgccacggga
gaggactcgtttgttgtcgcgtggaatactatggtagcgtccggtaacgacgtcgtcgtt
ctgtacaccatcgcgtggatttttttatccaccgtcatcttgtcgctcgtgctcgggatt
ttaatcgactcgtgttcgctcgtcgacatcgaggaagagcaacgcgcgcaagacgagctt
gaagatggcagactgaggtctgccatcgaacgtgcgggtgatatcgtgctagatccgaat
cggaaagcgaaacgggtactgcaaaacatgacattcgcggcgaacgcattcaggagtacg
ttgcgaaaacatgcgcgcagcaagcgcggcgactcgataaaagacagaggtgatacgagc
ttcaagtttaatcttttggatgcggccaggaaacaagaatgtgccgaacaagcaatacaa
tcgcaagcgaaaaagagtttaaagacggccgatggcagtacgcctacggcgatttcatcc
gtactcgcagcattaaagcctccggatcacggtggcaagctcgcgcaggtcaagaaggac
cgcttgagaaagcaaacagtcgaagatgttgctgcgtgcaggatatttctagattcgatc
ggattcaagttgaagacaccggcgcaagtactgaccataagcgagcacgctcttaaggag
gctcaacttcgcctgacgccaaagtttgtggagtatcaagactatcaagacaaagcgttc
ggggtgactagctctatcaaaagttctattaggcacagtatgacgaaaagatttgcggcg
caaaacaatcgtttaagcatcgaggataagagtaaggaagacgagcatgtcgtctttgac
gcgcacggtccttgggcggcgacaatcacgagatccatctcctcacgcgtgaagaaacag
tcgtcagagataccgggcgtgatcgtcacaaaagatggcgactttataccgctgtacgac
gatacgattcccgtcgagagatacaaatacttggtgcacaaaattgtttcacacaacctc
tttgagaacgccattctatgcatgatcatcgctggtagcgtgttactcgcgacagaaaca
aagacttggccagtggcgggatctcatactgcaaaagtgtacaccgcggttgatattact
tttacgactttatttggcgcagagatggtattaaagttattcgcctacgggttgtacgag
cgaccgactgcgtatctgaagaattccttcaacattctcgatggcgtcgtcgtctttaca
tcaatcatttcgctcaccgcggcagacgatggcagcggaagcgtgcgagcacttcgactt
ttgcgaatcatgcgcccgcttcgatccattcgtcgtttccctggtctccgccttgtcgtt
aacactgtactttccgcgatcccagccgtaagttacgtgtgcttcatcggtttagtttcc
atgtcaattttcgcacttcttggtatggagctctttatgggtaagttttggtcgtgtcga
gtggtgaatgatgcgagtagctacactacacaagcaacgtgcgaggcagcgggaggaaag
tggcgaaatgcaaagttcaactttgataactttggcgctgcacttttatcgacgtttcta
ctgcacgccggcgatgactggcaagaaatcatgtgggtcgccatggataccacaggcgtc
gggaccggcttgaaaacagataacaaccaagccgccgctctttattttgtattgacggtc
gccatcgggaatttcttttggttgaatttattagtcacggcgctcgtggacaactttaac
aagatggcttcgcaagacaagcttacgtttgtcaccccagcgcagcggcgctggcagcag
gctatactacgtgcaagcacgcaagattcagaggcatggcgcagaatcgtaccgccgcca
ggcaaaagcctttggtcgcgagctcgtctacttgcgcatcatatctcaaagccgaaaaag
tttgcgtacttcatcctcgtggtagtgtgcgcaaatttaatcgagctcttgacacaaacg
gcgaatatgagcagttcagcagaatatgctcacttctgcatgtctatcgcgttcactgcg
gtgtactctttggaaatgatgcttttgctcatggcgcaaggtcggacgcgttactttagg
aattattggaattggctggacgccttcgtcgtcgtagtttccatcgtacaggcgatcgga
caaagtctaaacgcaggcggtgtcatgaattacctacaattggtgagattgttgagatta
ctgaaactggtaaaggcacattctgggctgcggtcgctcttcaacacgttcataatgagt
cttccgggtgtcggaaacgtcgccgcgctatcgtccctcgcgatcttttcgtacgccatc
atgggtgtttcacttttcggcgatgaaaccggccctttcgaaggcggcgtgctatcgaag
tactcgaactttcaacgattcaccacagcttgctcatctctcatcggggtgtacacgggt
ggctgggttggcacgttcggcgaggtgtaccaaacagaggcgtgcttacgcacagaagca
ccgttcatgttggaatccagcatcgactgctcgtataacgctgctgcggtcccatacttt
atatcatttgtcatcatctctatatttttgctcggaaatttatttgtggcgatcattctc
gaaagattctcagtatcagcggacgacgagggactgtacgacaccgaggaggtggtggaa
attatcaagcacacgattcagcttcgacgactcgcaatcagaattaaaaagaaagtcgtg
cggtcgcgcgaacctggtggcgcgttatttgacgcatcaaccaaagcgcgtagcgtgatt
gagagattcacccacagcgctcaggaagaacgtgccgtcgtaaagggtcaccgaggcggg
agtgtcgctcgcgatcacgtcgcgacgctcgccgcattcgagacgaatggagagcagggt
aacgtcgtgcccggacggaaccagtccatcttagatctcgcaccagagacggatgtgaca
gcagaacgggaagtgcgaccggaaccggaacccgaactagaactggaaccaccggaacct
ctacgcggcgccgcattttttggtgagaacaggtttgagtcgcggcgtgcttacgcatct
tccacggatgctgactcggatgacgatcattacgcgtttgagatgaaagacccatctagt
ggacgccaaccagggctgaatacaccgaatgatggactgagtgaacgtgaaccgagcgaa
ctggcgtattccatgggtgaatcgtacgacgccgaagagagcgcgtcagatgaggacaga
ttcgctcagtcatcattttctcccgagtcgtatagatttaatgcctcaggagaagaagcg
acgcgggtgcattatgcaaggcatagcgattatctctacgattttcgggacgcggacgat
tcgcctgagcgccggcgaaaggcgtcttcgttgctcggaagcgaaacgagcgatgacggc
gcgacgggggggcagacgagcgacgcggtgtccgacggagagttcgcaaagctatctttt
agactatag
DBGET
integrated database retrieval system
