Ostreococcus lucimarinus: OSTLU_28903
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Entry
OSTLU_28903 CDS
T01029
Name
(RefSeq) predicted protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OSTLU_28903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
olu03041
]
OSTLU_28903
Enzymes [BR:
olu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OSTLU_28903
Spliceosome [BR:
olu03041
]
Complex C
Other components
Step II factors
OSTLU_28903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
AAA_22
HA2_C
HA2_N
AAA_19
Flavi_DEAD
AAA_30
nSTAND3
SRP54
SLFN-g3_helicase
ABC_tran
AAA_16
Herpes_ori_bp
AAA_29
TsaE
Motif
Other DBs
NCBI-GeneID:
4999455
NCBI-ProteinID:
XP_001415516
JGI:
28903
UniProt:
A4RR62
LinkDB
All DBs
Position
1:join(500604..500679,500794..502892)
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AA seq
724 aa
AA seq
DB search
MARAVGDDDDHPSTSSTDDLPVSRYANDIASAVKTNAVTVVIGETGSGKTTQIAQILLRS
GVVADGSAVAVTQPRRVAAVSVAKRVAEEMGVEIGKEVGYSVRFEDRTCRLTRIKYLTDG
TLLRELLEDPTLSRYSVVVLDEAHERSLHTDILFGLLKKLVSARELKLVITSATLDSEKF
STYFDDAPVFTVPGRTFPVQIAHATEAPKSYFQSAIETVVDVHVNTGPGDMLVFLTGQEE
IEKACRAVEAHVRSMPEGECPDVQVLPLYASLPPDMQSRVFHPHDPNVRRIIFATNIAET
SLTVPGIVFVIDPGVVKQVEYDAMTGMNALKVVPISSVQAKQRAGRAGRTQAGRCYRLYT
KDALELDMPAITRPEIQRTCLVGTILYLKTLNLKGLDVMTFDFLDPPDTALIADALRQLY
FVGAIDPDGKATSIGREMSSLPLEPCLSRAMVEAKRLDCVADTATVAAMLSVERVFLGQH
RDATESLHELATHEDFLLGDHAVLLRIYQAWESSGYQRKFHQRYSLSDRGMEFAREIRKQ
LLGVFKDKRKSDRNDFDCFSRTDEGLNRLRQSLCAGFVTKIAHRLPNHNGYRTLGENSTL
CQVHPSMARQLADKDGLLPEWIVYHELITTSRPFLRHVCKIEPEWISKQRELLSKKVNIH
RLSGGVLSPGDAESTDAASGHEADTVDANKAPVEGRRITDEQVSAARERFLARKKQKLAK
LAGK
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgcggttggtgacgacgatgatcatccttcgacgtcttccacggacgactta
ccggtctcgcgttacgcgaacgatattgcgagtgcggtaaagacgaatgcggtgacggtt
gtgattggggagacggggagcgggaagacgacacagattgcgcagattctcctgcgctca
ggcgtcgtcgccgacggctcggcggtggcggtgacgcagccgagacgtgtggcagctgtt
tccgtggcaaaacgcgtcgcagaagaaatgggggtagagattgggaaagaagttgggtat
tcggtgcgctttgaggacagaacgtgccgcctgacgaggataaaatatttaactgacggc
acgttactgcgagagcttctcgaagacccgactctgtcgcgttacagtgtcgtcgtcttg
gatgaggctcatgagcggtcgttgcacacagatatattattcggattattgaagaagctc
gtgtccgcgcgtgaactgaagctggtgattacttcggccacgctcgacagcgaaaaattc
tcgacgtatttcgacgacgcaccggtgttcaccgtgcctggacgcacgtttccggttcaa
atcgcgcacgccaccgaggctccaaagtcgtactttcaaagtgcgattgaaacggtggtg
gatgtacatgtgaataccggccctggggatatgttggtgttcctaacaggtcaagaagag
attgaaaaagcgtgtcgggctgtggaggctcacgtgcgatcgatgcccgagggagagtgt
ccagatgtgcaagtcttgccactctatgcatcactcccaccggatatgcagtcgagggtg
tttcacccacatgatccgaacgtgcgacgaataatctttgcgacaaatattgctgagacg
tcgctgacggtcccaggaatcgtttttgtgattgatccaggcgtggtgaagcaggttgag
tacgatgcgatgacgggaatgaatgcattaaaagtagtgcctatcagtagcgtgcaggcg
aagcagcgtgcaggacgtgcaggaagaacgcaagctgggcgatgctaccgactgtacaca
aaggacgcgctcgaactcgacatgccagcgatcactcggccagagatccaacggacatgt
ctagtcggtacgattctgtatctgaagacactgaatctaaaaggactagatgtgatgact
ttcgatttcttggatcctccagacactgcactcatcgcagatgctttgcgccaactttat
ttcgttggtgcaatcgatcccgatgggaaggcaacttctattggacgagagatgagttcg
cttccacttgagccatgcttatcgcgtgcgatggtcgaagcgaaacgccttgattgtgtt
gcagatactgcaacagttgccgcgatgttgagcgtcgaaagagtgtttttaggtcagcac
cgagatgcaactgagagtcttcacgagcttgcgactcacgaagattttcttcttggcgat
cacgcggtgttacttcgaatctatcaagcctgggagagcagtggatatcaaagaaaattt
caccagcggtattcgttgtcggatcgaggaatggagttcgcgcgagagatacgaaaacaa
ttacttggagtgttcaaggacaagcgtaaaagcgataggaacgactttgattgtttctca
cgaacagatgaaggtctgaaccgattgcgccaatcgctgtgcgcaggcttcgtgacaaag
attgcgcatcgactaccgaatcataatggctacagaacattgggagaaaattccacgctg
tgccaggtccacccttctatggctcgccaactcgccgacaaagacggtttgcttccagag
tggatcgtttaccatgagttgatcacgacttctcgaccctttctccgccacgtgtgcaaa
attgagccagaatggatttcaaagcaaagagagctgctctcgaagaaggtgaacattcat
cgtctctctggcggcgtgttgagccccggggatgctgaaagcacggacgcagcgagtggg
cacgaagccgacacggtggacgcgaataaagcgccagtcgaaggacgtagaatcaccgac
gagcaagtttctgccgcgcgagagcgcttcctggcgcgtaagaaacagaaattagcgaaa
ttagcgggaaaatag
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