KEGG   Ostreococcus lucimarinus: OSTLU_30768
Entry
OSTLU_30768       CDS       T01029                                 
Name
(RefSeq) predicted protein
  KO
K12880  THO complex subunit 3
Organism
olu  Ostreococcus lucimarinus
Pathway
olu03013  Nucleocytoplasmic transport
olu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:olu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OSTLU_30768
  09122 Translation
   03013 Nucleocytoplasmic transport
    OSTLU_30768
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:olu03019]
    OSTLU_30768
   03041 Spliceosome [BR:olu03041]
    OSTLU_30768
Messenger RNA biogenesis [BR:olu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     OSTLU_30768
Spliceosome [BR:olu03041]
 Complex C
  Other components
   EJC/TREX
    OSTLU_30768
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    OSTLU_30768
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40 EIF3I Beta-prop_WDR3_2nd WDR55 Beta-prop_WDR19_1st WD40_Gbeta ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_NOL10_N Beta-prop_EML eIF2A Beta-prop_HPS5 PAC11 CFAP251_N Beta-prop_IFT140_1st Tricorn_2nd Beta-prop_ACSF4 Beta-prop_Nup120_160 Beta-prop_TEP1_C Beta-prop_NUP159_NUP214 B-prop_COPA_B_2nd Beta-prop_Vps41 DUF7899
Other DBs
NCBI-GeneID: 5000858
NCBI-ProteinID: XP_001416742
JGI: 30768
UniProt: A4RUW7
LinkDB
Position
3:join(714692..714754,714841..715764)
AA seq 328 aa
MYMPNPGEFEPPKLTYDDSNARTTTLVGGKKAVKTVQWSVGGDKLASGGVEHDVRVHDVE
HGAGTGRGAQTLRGHAGAVEQLRFDPSRQGGDRALTVSSDKTAKIWDAKSGKCAGTIEMK
EGLMNAAWSPSGRHVAVGSKSDVISIVDVTTMKVIWEQKFKYEANEMMWDKTGKSFMMAT
GEGKMEKFTFDETTGSLTPLSSHFAHNGGCYCMAIDPTGKYHAMGAADAIVSLWESETNI
CYDTIVRLDYPIRSVSYSHDSRYIAAASEDLKIDVAEVMTGDCVAQIKTKEAMNTIAFHP
KELVLAYAGDGGDISLWSAFTAISAGTK
NT seq 987 nt   +upstreamnt  +downstreamnt
atgtacatgcccaatcccggggagttcgaacctccaaagctcacttacgacgactctaac
gcgcgaacgacgacgctcgtggggggtaagaaagccgtgaagaccgtgcagtggtcggtg
ggaggcgataagctcgcgtccgggggagtggagcacgacgtgcgcgtgcacgatgtcgaa
cacggggcgggcacgggacgaggggcgcagacgcttcgaggacacgcgggcgcggtggag
caattgcggttcgatccgtcgcgtcaaggaggtgatcgcgcgctgactgtgagttcggat
aaaacggcaaagatttgggacgcgaagagcgggaaatgcgcggggacgatcgagatgaag
gaaggattgatgaacgcggcgtggtcgccgagcgggcggcacgtcgccgtcgggagcaag
tcggacgtgatctcgatcgtcgacgtgacgacgatgaaggtgatttgggagcaaaagttc
aagtacgaggcgaatgagatgatgtgggataagaccgggaaatcgttcatgatggcgact
ggagaagggaaaatggaaaagtttacgtttgacgagacgacgggatcgttgacgccgctt
tcatcgcattttgcacataatggcgggtgttactgcatggcgatcgaccctaccggaaag
tatcacgccatgggtgctgcagatgcgatcgtgagcttatgggagtctgaaacaaacatc
tgctacgacactatcgtgcgcttggactacccgattcgctcagtttcctacagccacgat
agccgatatatagccgccgcttcggaagatttaaaaatagatgtcgcagaggtgatgact
ggcgattgcgtggcacaaatcaaaacgaaagaggcgatgaataccatagcgtttcacccg
aaggaattggttctggcgtacgccggcgacgggggagatatttcgctgtggagcgcgttc
accgccatctctgcaggtacaaagtag

DBGET integrated database retrieval system