Ostreococcus lucimarinus: OSTLU_31328
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Entry
OSTLU_31328 CDS
T01029
Name
(RefSeq) predicted protein
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
OSTLU_31328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
olu03009
]
OSTLU_31328
Ribosome biogenesis [BR:
olu03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
OSTLU_31328
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR5
WDR55
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_IP5PC_F
Beta-prop_SCAP
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
5001522
NCBI-ProteinID:
XP_001417326
JGI:
31328
UniProt:
A4RWG1
LinkDB
All DBs
Position
4:698686..701109
Genome browser
AA seq
807 aa
AA seq
DB search
MLELHRGRFVEWTPSAVTALAVAPGGALVACARESGAIEAYDGEWRCVARVPGSADAATS
ALAWCEAFADDDGATTRDEEAAAAATKKEERRRERRRRGGADARRATLLSASLDGRVRAW
DLATGRTTSETDSRGGAIWAMEAQPRTRTRRGDAQLVAIACDDGCARVLTMVAGKDVGSG
LAHKRAFLRVQGRLLSLAWHPSEPLLACGSSRGAAHVMDCVNYNELMRVSVCNIPHGAHG
ILNAGDEHCVWALKYLPDGTLVTGDSDGAVTFWDGKFSTELVRYQQHKADVLALATTPSG
NKVFASGVDSQVAEFEKLDEHLDKEEGYNQWTYTTSKRPHTHDVRALAMLTTGADDEDGI
LISGGNDAQLLAYNAGSFRKQHPVRVVSVPQRTPISITSVGGPNPPLLLAEHAKWLDIWR
IGESRKRADKKEGTMKLASAPAHVLRAELAGTRHILCSAISPNGKMIAVSDVHSLRLFDI
QSPKEGDDDLTWSIRRQEPPAGVTSAQLLAFAPDGKHLTAVSNSGAVYVIDLEDWVVSNV
LKSHLPKQSAAAEALAEAVRQSSQGVETVTANDIAVPVVSHLRVSSDNQWLVVVTARGGD
EAERAVDGLAPSFGGGVHVYNFDTMKLHVSLPPPKTHALWPPISSVAVSADGVLALAGPS
NALFTYDIDSVKPTKWSAALADAGVDAPTALREMPGQICGLSFDPKSKKSVLLAHTPTAI
ARVDLNAKITDDATTTSKKKRRRERERGAPENYATSDAPGGVRVVKLDNPCLYLGYAGVN
KALLIERPWADVLKSLAQPLYRHRFGT
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagctccaccgcgggcgcttcgtggagtggacgccgagcgcggtgacggcgctc
gcggtcgcgcccggcggcgccctcgtcgcgtgcgcgcgcgagagcggcgcgatcgaggcg
tacgacggcgagtggcggtgcgtcgcgcgcgtcccgggaagcgcggacgcggcgacgagc
gcgctggcgtggtgcgaggcgttcgcggacgacgacggggcgacgacgcgggacgaggag
gcggcggcggcggcgacgaaaaaagaggaacgacgacgcgaacgacgacgacgaggaggc
gcggacgcgcgaagagcgacgctgctgagcgcctcgctcgatggacgcgttcgggcgtgg
gatctggcgacgggacggacgacgagcgagacggacagccgaggaggggcgatttgggcg
atggaggcgcagccgaggacgcggacgagaagaggcgacgcgcagctcgtggcgatcgcg
tgcgacgatgggtgcgcgagagtgctgacgatggtggcggggaaagacgtgggaagcggg
ttggcgcataaacgggcgtttctgcgagtgcagggtcgattgctgagcctggcgtggcac
ccgagcgaaccgctgttggcgtgcgggtcgtcgagaggcgcggcgcacgtcatggattgc
gtcaattacaacgagctgatgcgcgtgtcggtgtgtaatattcctcacggggcgcatggg
atactgaacgccggagatgagcactgcgtgtgggcgctcaagtatcttccggacgggacg
ctcgtgactggggattcggatggcgcggtgacgttttgggacgggaagttttccaccgag
ttggtgcgataccagcagcacaaggctgacgtgctcgcgcttgcgacgactccgagtggg
aacaaagtgttcgcctcgggtgtggattcgcaagtggcggagtttgaaaagctcgacgag
cacttggacaaggaggagggatacaatcagtggacgtacacgacgagtaaacgaccgcac
acgcacgacgtgcgcgcgctcgccatgctgacgacgggcgcggacgacgaggacggtata
ttaatttcgggtggtaacgacgcgcaactcttagcgtacaatgcggggtcgtttaggaag
cagcatccggtgcgcgtcgtgagcgtgccgcagcgaacgccgatttccatcacgagcgtt
gggggaccgaatccgccgcttcttctcgcagagcacgcaaaatggttagacatttggcgc
attggtgaaagtcgcaagcgcgcggataaaaaagaaggcacgatgaagctcgcttcggca
ccggcgcacgtgttgcgtgccgagcttgcggggacgcggcacattttatgctcggctatt
tcaccaaatggtaaaatgatcgcggtaagcgacgttcacagcctgagactgttcgatatc
caatcaccaaaagaaggcgacgacgacttgacgtggtcgattcgtcgtcaagaaccccca
gcgggcgtgacttcggctcaacttctcgcgtttgcgcccgatggaaagcacctcaccgcc
gtgtcgaattcgggcgccgtgtacgtcatagacctcgaggactgggtggtttcgaacgtc
ctcaagtcgcacttgccaaagcaaagcgccgcggccgaggctctcgcggaggcggtgcgt
caatcgagtcaaggcgtggaaacggttaccgcaaacgacatcgcggttcccgtggtgagt
cacctgagagtgagtagcgacaaccaatggctcgttgtcgtcaccgcgcgcggcggtgat
gaagccgagcgcgccgtggatggtttggcgccatccttcggtggcggtgttcacgtatac
aacttcgatacgatgaagcttcacgtatctttacctcccccaaagacgcacgcgttgtgg
ccgccgatttcgtccgtcgcggtgagcgccgacggtgtcttggcgctcgccggcccttcc
aacgcgctctttacgtacgacatcgacagcgtgaaaccgacaaagtggagcgccgcgctc
gccgacgccggcgtcgacgctccaacagcacttcgcgagatgcccggccagatttgcggt
ttgagctttgatccaaagtcaaaaaagtcagtgttgctcgcgcacacgcccaccgccatc
gcgcgggtggatttgaacgccaaaatcaccgacgacgcgactacaacgtccaagaaaaaa
cgcagacgcgagcgcgagcgtggggctcccgaaaattacgccacaagcgacgcccccgga
ggcgttcgcgtcgttaaactcgacaacccgtgcttgtatttgggttacgccggcgtgaac
aaggcacttttgatcgagcgtccgtgggccgacgtactcaagtccttggcgcagccgttg
tacaggcatagattcggcacctaa
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