Ostreococcus lucimarinus: OSTLU_32889
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Entry
OSTLU_32889 CDS
T01029
Name
(RefSeq) predicted protein
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03018
RNA degradation
olu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OSTLU_32889
09123 Folding, sorting and degradation
03018 RNA degradation
OSTLU_32889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_32889
03041 Spliceosome [BR:
olu03041
]
OSTLU_32889
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
OSTLU_32889
mRNA degradation factors
5'-3' decay
Lsm complex
OSTLU_32889
Spliceosome [BR:
olu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
OSTLU_32889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
5003382
NCBI-ProteinID:
XP_001419048
JGI:
32889
UniProt:
A4S0W5
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All DBs
Position
8:join(28197..28399,28525..28615)
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AA seq
97 aa
AA seq
DB search
MSAPTLTNMLDARVSVITNDGRHIVGTLRGFDQVTNVILEDCAERVYSSESGVEEAPLGV
YMIRGDNVALVGPVDEELDAELDLSETRAPPLKAIKF
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgccgacgctgacgaacatgctcgacgcgcgcgtgagcgtcatcacgaacgac
ggacgacacatcgtcggcacgctgcgagggttcgaccaggtgacgaacgtgatcttggag
gactgcgccgagcgcgtgtactcgagcgagagcggcgtcgaggaagcgccgttgggggtg
tatatgatacggggagataatgttgcgctcgtgggaccggtggatgaagaattagatgca
gagttagatttatcggagaccagggcaccgccgcttaaggcgataaagttttga
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