Ostreococcus lucimarinus: OSTLU_34710
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Entry
OSTLU_34710 CDS
T01029
Name
(RefSeq) predicted protein
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OSTLU_34710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
olu03041
]
OSTLU_34710
Enzymes [BR:
olu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OSTLU_34710
Spliceosome [BR:
olu03041
]
Complex A
U2 snRNP components
U2 related factors
OSTLU_34710
Complex B
OSTLU_34710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
5003581
NCBI-ProteinID:
XP_001419709
JGI:
34710
UniProt:
A4S294
LinkDB
All DBs
Position
9:complement(join(108580..109152,109318..109777,109853..110991))
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AA seq
723 aa
AA seq
DB search
MNEVFDSSGGESSEDEAERDEAKTTDVLSEDAVEAKTEVDDDDDDDEAWAKKQTAKLSKT
ERLGTVNHDEIDYEPVKKNFYIEAKEIASMTKAEVKQLRVELDGIKCRGKKVPKPIKTWA
QAGLNNRVHELIRRSGFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAYILPMLRHIN
AQEPLASGDGPIGMIMGPTRELVTQIGKDCKRYGKAMGFSAVSVYGGSGIAAQIGDLKRG
AEIVACTPGRMIDLLTTGSGKITNLRRVTYMVLDEADRMFDMGFEPQITRILANLRPDRQ
TVMFSATFPHTMEALARAALDNPIEIQIGGKSVVNSDIEQLVELRPEEDRFLRVLELLGE
WYERGKIIIFVASQDKADSTTISDFKSDVCNILVATSVAARGLDVKDLRLVINYDTPNHL
EDYVHRVGRTGRAGQKGTAVTFISEDEEKFAPDLVKALKESKQNVPQDVQAMADEFTRKR
KEGLVGAAGSGFGGSGFKFNQEEQDLLRKQKRDAARAAGLDVDDGESDSDEEPAAHTPGA
LVAKGGLTPAQIAQAAAQSVFAKMKQPQKQAAGAQNTKAIALAQSYALAHGASAGAAKAA
ALAAALNAQHAKTSRGPTQSGSHFETELEINDFPQFARYKVTHKDTLVQIMEHTGAAVTA
KGQYAAPGRPLAPGDRKLYLLIEGPTERVVKEGKNYVKNIIETAIAKQALPGAAGQPQGR
YRI
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaggtcttcgactcaagcggaggcgagtcgtccgaagacgaagccgaaagagat
gaagctaaaactacggatgttctgtcggaagacgcggtcgaagcaaaaactgaggtagat
gacgacgacgacgacgacgaagcgtgggcaaagaagcaaaccgcgaaattgagcaagact
gaacgtctcgggacggtgaatcacgacgagatcgattacgaaccggtgaagaaaaacttt
tacatcgaagcgaaggaaatagcgtcgatgaccaaggcggaggtgaagcagcttcgtgtg
gagttggacggaatcaagtgtcgaggtaaaaaggtgccgaaacccatcaagacgtgggcg
caggcgggcttgaacaatcgcgtgcatgagctgattcgccggtctggattcgaaaagccg
atgcctattcaggcacaagcgcttcccgtgatcatgtccggacgcgattgcatcggggtc
gcgaaaaccggtagcgggaagactttagcgtacattttaccgatgttgcgccacatcaac
gcgcaggagcccctcgcctccggcgacggacctattggtatgatcatgggacctacgaga
gagttggtgacgcagattggtaaagattgcaagcgttacggaaaagccatggggttttcg
gccgtgtccgtgtacggtggctcgggtatagcggcgcagattggcgatttgaaacgcggc
gcggaaatcgtcgcgtgcacgcccggtcgcatgattgacttgctgacgacaggttcggga
aaaattacaaacttgcgtagagtaacttacatggtgctcgatgaggcagaccgtatgttc
gatatgggctttgaaccacaaattactcgcatcctggccaatcttcgtccggatcgccag
acggtgatgtttagcgccacgtttccgcacacgatggaggcgttggcgcgtgccgcgctg
gacaacccgatcgagatccaaatcggtggaaagtccgtggtgaactccgatatagagcag
cttgtggaacttcgtcccgaagaagatcgatttttacgagtcttagaattactcggcgaa
tggtacgagcgcggcaagattataatcttcgtcgcgagccaggacaaggcggactcgact
acgatttcagacttcaaatcagacgtctgtaacatcctcgtcgccacctccgtcgccgct
cgcgggttggatgtcaaggatttgaggctcgtcatcaactacgacacgcctaaccacttg
gaggattacgtgcacagagttggacgtactggacgcgccggccagaaagggaccgcagta
acgtttatttcagaagacgaagaaaagttcgcacccgacttagtcaaggcgcttaaagag
tcgaagcaaaacgtcccgcaggatgtgcaagcaatggcggatgagtttactcgtaagcgc
aaggagggtctcgtcggtgccgctggttctggcttcggtggttctggattcaaattcaac
caagaagagcaagacctcttgcgcaaacagaagcgtgacgccgctcgagcggctggcctg
gatgtagacgatggtgagagcgatagtgacgaagagccagctgcgcacacgccaggagcg
ctcgtcgccaagggtggcttgacgcccgcgcagatcgcgcaagctgcggcgcaatccgtt
tttgcaaaaatgaagcagccgcaaaaacaagctgcaggcgcgcaaaatacgaaagcgatc
gcattggctcagagctacgcgcttgcgcacggcgcatcggcgggtgccgctaaagccgcc
gccctcgccgcagcgctcaacgcgcagcacgcaaaaacgtccagagggccgacgcagtca
ggctcgcacttcgagactgagctcgagatcaacgacttcccacaattcgcgcgctacaag
gtcactcacaaagacacgttagtgcaaatcatggagcataccggcgccgcagtcacggca
aaagggcaatacgccgcccccgggcgtccgctcgcccccggcgatcgcaagctctacctc
ctcatcgaaggccccaccgagcgcgtggtcaaggaaggaaagaactacgtcaagaacatc
atcgagaccgccatcgctaagcaagcccttcccggcgccgcaggtcaaccacaaggccgt
tatcgcatctag
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