Ostreococcus lucimarinus: OSTLU_36189
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Entry
OSTLU_36189 CDS
T01029
Name
(RefSeq) predicted protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSTLU_36189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_36189
03012 Translation factors [BR:
olu03012
]
OSTLU_36189
Enzymes [BR:
olu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OSTLU_36189
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
OSTLU_36189
Translation factors [BR:
olu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
OSTLU_36189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HA2_C
Helicase_C
HA2_N
AAA_19
OB_NTP_bind
Ank_2
ATPase
ResIII
AAA_16
nSTAND3
AAA_22
T2SSE
PhoH
KDZ
Motif
Other DBs
NCBI-GeneID:
5000476
NCBI-ProteinID:
XP_001416316
JGI:
36189
UniProt:
A4RTG7
LinkDB
All DBs
Position
2:complement(124230..127226)
Genome browser
AA seq
998 aa
AA seq
DB search
MRGRREGEEATNARAARLRAKIASDASLAAIQTKREQLPVREFKDAILNAVRANQVVLVA
GSTGCGKTTQVPQYVLDDAWANGRGASIVCTQPRRISAMTVSERIANERGESIGQSTVGY
QIRLESRVSADCSLLFCTSGVLLRRLTSEASDKLCESLTHIIIDELHERDLFADFLTIIL
KGVIPKHPHLKLVLMSATMREDLFSEYFGGCPVISVPGYTHPVNEYHLEDILPMIGWGGV
HHTSKKASGGGGGEPRVRAPTSGASVDVMREAIMRAFLEDTDESFDWLMQCARETDSASG
LSHVNVAHSTGATALMAAAGKGRQMEVSQLLGLGASPAMRSTDGSNAADWADKFGHVELA
DALRSVDDENEDAGSHEQSALLLSDYQLSVDPDEVDVDLIHNLIVWIMKERAIDEGSEGA
ILVFLPGWDEISKLRDSLTADYNVCHSASVLPLHSMVAPADQRKVFQRPPKGLRKIVLST
NIAETAVTIDDVVFVIDSGRLKEKSYDAYSAVSTLQAAWISQASAKQRRGRAGRVRPGEC
YRVYSTSRYDSFAQYQLPEMQRSPLEELCLQVRVLAESGAGVVDDGPGSTAGFLARAVEP
PVAQATDNAVQLLKDIGALTEEERLTRLGRHLGELPLHPRVGKMILYAALFGVLDPILTV
ACAAAYRPPFIISADGRKSGDASRAAFSNEAGGGSDHLAVTKAYMAWEQVQRDGRQNERY
FLNANSLSPSTLHMIKGMRQQLITALIQRGIISDLRSASANSSSGALVRAVLAVGMYPLV
GRFLPKCKAPTLATLRGERVRVHAFSVNGKLDVSALGELNESGEKIATLACFDELIRGPH
AVQVRECTLVAAAAIVFVCSTLTVKPDVPQIDPETGEARARDGPPSALLVVDNWLRFRVP
LRAVAQITVLRLRLHKAFAMRVERPKDALPADMRGAVDAIARVLSDADAAFIESSSFARS
FAGFGGGRGGGGRGDGGRGGRARGGRARGGARIPAPRR
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggtcgacgcgagggcgaagaggcgacgaacgcgcgagcggcgcgcttgcgggcg
aagatcgcgagcgatgcgtcgttggcggcgatacagacgaaacgcgaacagttaccggtg
cgggagtttaaggatgcgatattgaacgcggtacgggcgaatcaagtcgtgctcgtcgcc
gggtcgacgggttgcgggaagacgacgcaggtgccgcagtacgtcttggacgatgcgtgg
gcgaacgggcgcggggcgtcgatcgtgtgcacgcaaccgcgaaggattagcgcgatgacg
gtttccgagcgcatcgcgaacgagcgcggggagagcatcgggcagagcacggtcggttac
cagattcgattggaaagccgggtctcggcggattgttcgttgttgttttgcacgtccggc
gtgctgttgcgacgactcacgagcgaggcgtcggataagctgtgcgagtcattgacgcat
atcatcatcgacgagctgcacgagcgagatttgtttgcggatttcctaaccatcattttg
aagggcgtgattccgaagcatccgcacctaaagctcgtgctgatgtcggcgacgatgcgc
gaagatttgtttagcgaatactttggtgggtgtccggtgatttcagtgccaggttatacg
catccggtgaatgagtatcacctggaagatatcttgcccatgatcggatggggcggcgtg
catcacacgtcgaagaaggcgagcggaggcggcggcggcgaaccgagagtgcgcgcaccc
acttcgggcgcgagcgtggacgtcatgcgcgaggcaatcatgcgagcatttttagaggac
accgacgagtcgttcgattggctcatgcagtgcgcgcgcgagacagattctgcgagcggg
ttgtcgcacgtaaacgtcgcgcactccacgggcgccaccgcgctcatggcggcggcgggt
aagggaagacagatggaagtgtcgcagcttttaggtttaggagcgtcgcccgcgatgcga
agcaccgacgggagcaacgccgcggattgggcggataagtttggacacgtcgagctcgcg
gacgcgttgcgaagcgtggacgacgaaaacgaagacgcgggaagtcacgagcagtcggcg
cttctattgagcgattaccagctctccgtggatccagacgaggtggacgtggacttaatc
cacaatttgatcgtttggatcatgaaagagcgcgcgatcgacgaaggatccgagggcgcg
attttagtctttttgcccggctgggacgaaatctccaaacttcgcgactcgttgacggcg
gattacaacgtctgtcactcggcgagcgtcctacctttgcactccatggtcgccccggcg
gatcaacgaaaagtcttccaacgtccacctaaagggttgcgcaaaatcgtcctctccacc
aacatcgcggagacggcggtgacgattgacgacgtcgtcttcgtcatcgacagcgggcgg
ttgaaggaaaagagttacgacgcgtactctgcggtctctacgctccaggcggcttggatc
tcgcaagcgagtgcgaaacagcgacgcggtcgcgccggtcgcgtgcgtcccggcgagtgc
tatcgcgtgtactccacctcacggtacgactcgttcgcgcagtaccagttgcccgagatg
cagcggtcgccgctcgaggagctgtgcttgcaggtgcgcgtgttggccgaaagcggcgcg
ggcgtcgtggacgatgggccgggaagcacggctgggtttctcgcgcgcgcggtcgagccc
cctgtggcgcaagcgacggacaatgcggtgcaattgctcaaggacatcggcgctttgacg
gaggaggagcgcctcacgcgactcggccgccatctcggcgagcttccgttgcacccgcgc
gtggggaagatgatcttgtacgccgctctgtttggcgttctcgatccgattctcaccgtc
gcgtgcgctgcggcgtatcgtccgcccttcatcatctccgccgacggtcgaaaatcgggc
gacgccagtcgcgcggcgttttccaacgaagccggcggcgggagcgatcacttggcggtg
accaaggcgtacatggcgtgggagcaagttcagcgcgatgggcgtcaaaatgaaaggtac
tttttgaacgcgaattctttgtcgccgtcgacgctgcacatgatcaagggcatgcgacag
caattaatcacggcgttgattcagcgcggcatcatttcagatttgcgaagcgcgagcgca
aactcgtcatccggcgcgcttgtgcgcgcggtgctcgccgtgggcatgtaccctttggtg
ggacgatttttaccaaagtgcaaagcgccgacgttggcaacgcttcgcggcgagcgcgtg
cgcgtgcacgcgtttagcgtcaacggcaaactcgacgtgagcgcgctcggcgagctcaac
gaatcgggtgaaaaaattgccaccttggcgtgcttcgacgaactcattcgaggccctcac
gcggtgcaagtgcgcgagtgcacgttggtcgccgccgcggcgatcgtgttcgtgtgctcc
acgctcacggtgaaaccagacgtgccgcaaatcgatcccgaaaccggcgaggcgcgcgcg
agagacggtccgccgtcggcgttgttggtcgtggacaattggttgagatttcgcgtgccc
ttgcgcgcggtggcgcagatcacggtattgcgcttacgtttgcacaaagcgttcgccatg
cgcgtcgagcgaccgaaagacgcgctaccggcggatatgcgaggcgccgtggacgccatc
gcgcgcgtgctgagcgacgccgacgccgcgttcatcgagtcctcgagtttcgctcgcagt
ttcgcaggcttcggcggcgggcgcggcggcggcgggcgcggcgatggaggtcgcggcggt
cgcgcgcgcggcggtcgcgcgcgcggcggcgcgagaatcccggcgcctcgacgatag
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