Ostreococcus lucimarinus: OSTLU_37948
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Entry
OSTLU_37948 CDS
T01029
Name
(RefSeq) predicted protein
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03020
RNA polymerase
olu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OSTLU_37948
09124 Replication and repair
03420 Nucleotide excision repair
OSTLU_37948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
olu03021
]
OSTLU_37948
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_37948
03400 DNA repair and recombination proteins [BR:
olu03400
]
OSTLU_37948
Transcription machinery [BR:
olu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
OSTLU_37948
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
OSTLU_37948
DNA repair and recombination proteins [BR:
olu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
OSTLU_37948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHS2_Rpb7-N
S1
Motif
Other DBs
NCBI-GeneID:
5004006
NCBI-ProteinID:
XP_001420140
JGI:
37948
UniProt:
A4S3R6
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All DBs
Position
10:complement(join(307305..307745,307931..308029))
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AA seq
179 aa
AA seq
DB search
MFFHVNLERNITLEPRHFGARMKAVLEEKLRHEVEGTCSGRYGFIVMVTRLAEVSEGVVT
DDGTARAKFHIKYDCVVFRPFKGEVMDAVVTQVNKFGFFAEAGPLQLFVSNALITEDMQF
DSSGENCYVSDDQQIRIQRDASVRVRIVGMRIDANDIFCIATIKDDYLGLIDFGSGGGI
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgttctttcacgtcaacctcgagcgtaacatcacgctcgaaccgcgacacttcggggcg
aggatgaaggcggtgctggaggagaaactgcgacacgaggtcgagggcacgtgctcggga
aggtatgggttcatcgtcatggtcacgcggctggcggaggtgagcgaaggcgtggtgacg
gacgacggcacggcgcgagcgaagtttcacatcaagtacgattgtgtcgtgtttcgcccg
ttcaagggcgaggtcatggacgcggttgtgacgcaggtgaataagtttggattcttcgcc
gaggctgggccgctgcagttgttcgtgtcgaacgcgctcatcacggaggacatgcagttt
gatagctcgggggaaaattgttacgtgagcgacgaccagcagattagaatccaacgcgac
gcatccgtgcgagtgcgcatcgtcggcatgcgcatcgacgcgaacgacattttctgcatc
gcgacgattaaggatgattatttgggtctcatcgatttcggctcggggggcgggatttaa
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