Ostreococcus lucimarinus: OSTLU_38656
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Entry
OSTLU_38656 CDS
T01029
Name
(RefSeq) predicted protein
KO
K03679
exosome complex component RRP4
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSTLU_38656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_38656
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
OSTLU_38656
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
OSTLU_38656
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
EXOSC1
Bep_C_terminal
Motif
Other DBs
NCBI-GeneID:
5002148
NCBI-ProteinID:
XP_001418126
JGI:
38656
UniProt:
A4RY84
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All DBs
Position
5:complement(842502..843530)
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AA seq
342 aa
AA seq
DB search
MVVSFRDADASTTRAFKRAKRALEQCATASSSARAFVSPGERIPGIDSSEGFLRGHGTRP
IAEDNGTDGDGDDDRGLVATTAGVVERVNKLVSVRALKARYAPETGDVVLGRVKEISGKR
WILDVNARQNGVLQLSAVHLPGNVQRRRNDVDELNMRMLYAEDDVVSAEVQSVYADGAAA
LHTRSLKYGCLKNGQLVRVTANLVRRLPQHFHRLKMDEFHDGVAAEANDVEILLGCNGFI
WVGAPSGATAPRESEIRREPSDVVDELRELHGDEVSPVQRENISRVANSVRALAELFLPI
SPPAVMDVFKASSECGVAVRDMLSQGFLTRILEREFEKRVAD
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgagttttcgagacgccgacgcgtcgacgacgcgcgcgttcaagcgcgcgaag
cgcgcgctggagcaatgcgcgacggcgagctcgtccgcgcgcgcgttcgtgagcccgggc
gaacgcatcccagggatcgattcgtctgaaggtttcttgcgaggacacggcacgcgaccg
atcgcagaggacaatggaaccgacggtgacggcgacgatgatcgtgggttagtggccacg
accgcgggcgtggttgaacgcgtgaataaactcgtctcagtgcgagcgttgaaagcgcgc
tatgcgccagaaacgggtgacgtcgtgcttgggcgcgtgaaagagatatctggtaagcgt
tggattttagacgtgaacgcgcgacagaatggggtattgcagctcagtgcggtgcatttg
cccgggaacgtgcagagacgacggaacgatgtggatgagttgaacatgcgcatgctgtac
gccgaagacgacgtcgtgagcgccgaagtgcagagcgtgtacgccgatggcgccgccgcg
ctgcacacgcgaagcttgaagtacggttgcttgaagaatggtcagctcgtgcgagtgact
gcgaatttagtgcgccgattgcctcagcattttcacaggcttaagatggacgagtttcac
gacggcgtcgccgctgaagcgaacgacgtggaaatcttactcgggtgcaacggtttcatt
tgggttggtgcgccgagcggcgccaccgcaccgcgcgagtcggagattcgccgcgagccg
agtgatgtcgtggacgagctgcgcgagcttcacggcgatgaagtgtctccggttcaacgc
gaaaatatatcccgcgtggcaaattcagtgcgcgcgctcgccgagctgttccttcccatc
tcgccgccggcggtcatggatgtttttaaagcgtcgagcgagtgtggggtggcggtgagg
gatatgctgagccaaggattcttaactcgtatcctcgagcgagaattcgaaaagcgcgtc
gccgactga
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