KEGG   Ostreococcus lucimarinus: OSTLU_38656
Entry
OSTLU_38656       CDS       T01029                                 
Name
(RefSeq) predicted protein
  KO
K03679  exosome complex component RRP4
Organism
olu  Ostreococcus lucimarinus
Pathway
olu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:olu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OSTLU_38656
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:olu03019]
    OSTLU_38656
Messenger RNA biogenesis [BR:olu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     OSTLU_38656
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     OSTLU_38656
SSDB
Motif
Pfam: RRP4_S1 KH_6 ECR1_N RRP40_S1 EXOSC1 Bep_C_terminal
Other DBs
NCBI-GeneID: 5002148
NCBI-ProteinID: XP_001418126
JGI: 38656
UniProt: A4RY84
LinkDB
Position
5:complement(842502..843530)
AA seq 342 aa
MVVSFRDADASTTRAFKRAKRALEQCATASSSARAFVSPGERIPGIDSSEGFLRGHGTRP
IAEDNGTDGDGDDDRGLVATTAGVVERVNKLVSVRALKARYAPETGDVVLGRVKEISGKR
WILDVNARQNGVLQLSAVHLPGNVQRRRNDVDELNMRMLYAEDDVVSAEVQSVYADGAAA
LHTRSLKYGCLKNGQLVRVTANLVRRLPQHFHRLKMDEFHDGVAAEANDVEILLGCNGFI
WVGAPSGATAPRESEIRREPSDVVDELRELHGDEVSPVQRENISRVANSVRALAELFLPI
SPPAVMDVFKASSECGVAVRDMLSQGFLTRILEREFEKRVAD
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggtggtgagttttcgagacgccgacgcgtcgacgacgcgcgcgttcaagcgcgcgaag
cgcgcgctggagcaatgcgcgacggcgagctcgtccgcgcgcgcgttcgtgagcccgggc
gaacgcatcccagggatcgattcgtctgaaggtttcttgcgaggacacggcacgcgaccg
atcgcagaggacaatggaaccgacggtgacggcgacgatgatcgtgggttagtggccacg
accgcgggcgtggttgaacgcgtgaataaactcgtctcagtgcgagcgttgaaagcgcgc
tatgcgccagaaacgggtgacgtcgtgcttgggcgcgtgaaagagatatctggtaagcgt
tggattttagacgtgaacgcgcgacagaatggggtattgcagctcagtgcggtgcatttg
cccgggaacgtgcagagacgacggaacgatgtggatgagttgaacatgcgcatgctgtac
gccgaagacgacgtcgtgagcgccgaagtgcagagcgtgtacgccgatggcgccgccgcg
ctgcacacgcgaagcttgaagtacggttgcttgaagaatggtcagctcgtgcgagtgact
gcgaatttagtgcgccgattgcctcagcattttcacaggcttaagatggacgagtttcac
gacggcgtcgccgctgaagcgaacgacgtggaaatcttactcgggtgcaacggtttcatt
tgggttggtgcgccgagcggcgccaccgcaccgcgcgagtcggagattcgccgcgagccg
agtgatgtcgtggacgagctgcgcgagcttcacggcgatgaagtgtctccggttcaacgc
gaaaatatatcccgcgtggcaaattcagtgcgcgcgctcgccgagctgttccttcccatc
tcgccgccggcggtcatggatgtttttaaagcgtcgagcgagtgtggggtggcggtgagg
gatatgctgagccaaggattcttaactcgtatcctcgagcgagaattcgaaaagcgcgtc
gccgactga

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