KEGG   Ostreococcus lucimarinus: OSTLU_39197
Entry
OSTLU_39197       CDS       T01029                                 
Name
(RefSeq) predicted protein
  KO
K10755  replication factor C subunit 2/4
Organism
olu  Ostreococcus lucimarinus
Pathway
olu03030  DNA replication
olu03410  Base excision repair
olu03420  Nucleotide excision repair
olu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:olu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    OSTLU_39197
   03410 Base excision repair
    OSTLU_39197
   03420 Nucleotide excision repair
    OSTLU_39197
   03430 Mismatch repair
    OSTLU_39197
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:olu03032]
    OSTLU_39197
   03036 Chromosome and associated proteins [BR:olu03036]
    OSTLU_39197
   03400 DNA repair and recombination proteins [BR:olu03400]
    OSTLU_39197
DNA replication proteins [BR:olu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    OSTLU_39197
  DNA Replication Termination Factors
   ELG1-RFC complex
    OSTLU_39197
Chromosome and associated proteins [BR:olu03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    OSTLU_39197
DNA repair and recombination proteins [BR:olu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     OSTLU_39197
  Check point factors
   HRAD17(Rad24)-RFC complex
    OSTLU_39197
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid RuvB_N AAA_14 Viral_helicase1 DNAX_ATPase_lid AAA_5 AAA_22 AAA_assoc_2 AAA_16 DEAD Mg_chelatase RNA_helicase nSTAND3 ABC_tran AAA_18 AAA_30 AAA_33 AAA_28 AAA_11 AAA_7 AAA_3 ATPase_2
Other DBs
NCBI-GeneID: 5004700
NCBI-ProteinID: XP_001420841
JGI: 39197
UniProt: A4S5W4
LinkDB
Position
12:complement(404188..405192)
AA seq 334 aa
MPWVEKYRPKTLDDLVGNDDAVDRMRTMVRSGFMPNLIFSGPPGCGKTSAIGVLARELLG
DKYKEAVLEMNASDERGIDVVRNKIKMFAQKKVTLAPGRTKLVILDEADSMTTAAQQAMR
RTMEIYSATTRFALACNTSEKVIEPIQSRCAIVRFGKLTDAQVLKRLMTVVEAEKVTYVP
KGLEAIVFTADGDMRQALNNLQSTALGFGMVNEENVFRVCDQPHPNIVRDAFSFILQGNV
DDAYARLKSLHDQGYSVFDIIGTMYRVCKNFDDTAMPEFIKLELIRIIGFTHLRLSEGCA
TMIQIGGGVARMVELVSDAKKMGGYSAELGLDAL
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgccgtgggtcgagaagtaccgccccaagaccctggacgatctcgtcgggaacgacgac
gcggtcgatcgcatgcgaaccatggtgcggagcggcttcatgccaaacttgatcttttcc
ggtcccccggggtgcgggaagacgtccgcgatcggcgtgctggcgcgagagctgctggga
gataaatacaaggaggcggtgctggagatgaacgcgagcgacgagcgagggatcgatgtg
gtgaggaataagattaaaatgtttgcgcagaaaaaggtgacgctcgcgccgggacgaacg
aaactggtgatattggacgaggcggatagcatgacgacggcggcgcagcaagcgatgcga
agaacgatggagatttacagcgcgacgacgcggtttgcgttggcgtgtaacacgagtgag
aaggtgatcgaaccgattcagtcgcggtgcgcgatcgtgcggttcgggaaactgacggac
gcacaggttttgaagaggttgatgaccgtggtggaggcggagaaggtgacgtacgtgccg
aaaggtttagaggcgatcgtgttcaccgcggatggggacatgagacaggcgttgaataac
ttgcaatcgacggcgctcggtttcgggatggtgaacgaggaaaacgtgtttcgagtgtgc
gatcaaccgcatccgaacatcgtgcgagacgcgttttcgttcattttgcaagggaacgtc
gatgacgcgtacgcgcgcttgaagtcgctgcacgaccaagggtattcggtgttcgacatc
atcggcaccatgtaccgagtgtgtaaaaattttgacgatacggcgatgccagagttcatc
aagctcgagttgattcgcatcataggattcacgcatttgcgcctttccgagggatgcgcg
acgatgattcagatcggcggcggcgtcgcgcgcatggtcgagctcgtgagcgacgcgaag
aagatgggcggatacagcgccgagctcggcctagacgcgctttag

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