Ostreococcus lucimarinus: OSTLU_39977
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Entry
OSTLU_39977 CDS
T01029
Name
(RefSeq) predicted protein
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03022
Basal transcription factors
olu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OSTLU_39977
09124 Replication and repair
03420 Nucleotide excision repair
OSTLU_39977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
olu03021
]
OSTLU_39977
03400 DNA repair and recombination proteins [BR:
olu03400
]
OSTLU_39977
Transcription machinery [BR:
olu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
OSTLU_39977
DNA repair and recombination proteins [BR:
olu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
OSTLU_39977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
4999732
NCBI-ProteinID:
XP_001415467
JGI:
39977
UniProt:
A4RQX7
LinkDB
All DBs
Position
1:join(358476..358725,358843..359450)
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AA seq
285 aa
AA seq
DB search
MAAREDDVADDKSLLVVLVETNPRYWAASEGKGDGTAAANGLSSVLEATTVFLNSFFALN
QQNRAAVIAVHDDGCHYLYTSPLELNAGDASASATGKKRTKTATPSSRAAMSSPFAGALS
LALCYCNRAQTLETAAGLRVRPRILCLQASQDNPTDYISMMNAIFSAQRQSIPIDAFALG
EHDLPFLQQAAHITRGAYVKPTHGAGLLQYLLSTAALDMRSRSHLKLPAARGVDFRASCF
CHKRPVSVGFVCSVCLSIFCERRSSCDTCGADFAADAQVTSVPSA
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcgcgaagacgacgtggcggacgataagtcacttttagttgtactcgtggag
acgaacccgcggtactgggcggcgagcgaggggaagggagacggcaccgcggcggcgaac
gggttgtcgagcgtgctcgaggccacgacggtgtttctgaatagtttctttgctttgaat
cagcaaaatagagcggcggtgatcgcggtgcacgacgatggatgccattatctgtatacg
tcgccgttggagttaaacgctggagacgcttcggcaagtgcgacgggtaagaagcgtacg
aagacggcgaccccatcgtcgcgcgcggcgatgtcgtcgcctttcgccggcgcgttgagt
ctggcgctgtgttactgcaaccgcgcgcaaacgctggaaaccgccgccggtttacgagtc
agaccgcgcattctgtgcttacaagcatctcaagacaatcccacggattacatctcgatg
atgaacgcgatattttcggcgcaacgacaatcaatacccatagacgcgttcgcgctcggc
gagcacgatttgccgtttctccaacaagccgcgcacatcactcgcggcgcctacgtaaag
cccacgcatggcgccggtttgcttcaatacctcctctccaccgccgccctggacatgcgc
agtcgctctcacctcaagctccccgccgcgcgcggcgtcgactttcgagcctcttgtttc
tgccacaagcgtccggtgagcgtcggcttcgtgtgctcggtgtgcctcagcatcttttgc
gaacgtcgatcgtcgtgcgatacctgcggcgccgacttcgccgccgacgcccaagtcacg
agcgttccatccgcgtag
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