KEGG   Ostreococcus lucimarinus: OSTLU_39977
Entry
OSTLU_39977       CDS       T01029                                 
Name
(RefSeq) predicted protein
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
olu  Ostreococcus lucimarinus
Pathway
olu03022  Basal transcription factors
olu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:olu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    OSTLU_39977
  09124 Replication and repair
   03420 Nucleotide excision repair
    OSTLU_39977
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:olu03021]
    OSTLU_39977
   03400 DNA repair and recombination proteins [BR:olu03400]
    OSTLU_39977
Transcription machinery [BR:olu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     OSTLU_39977
DNA repair and recombination proteins [BR:olu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     OSTLU_39977
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 4999732
NCBI-ProteinID: XP_001415467
JGI: 39977
UniProt: A4RQX7
LinkDB
Position
1:join(358476..358725,358843..359450)
AA seq 285 aa
MAAREDDVADDKSLLVVLVETNPRYWAASEGKGDGTAAANGLSSVLEATTVFLNSFFALN
QQNRAAVIAVHDDGCHYLYTSPLELNAGDASASATGKKRTKTATPSSRAAMSSPFAGALS
LALCYCNRAQTLETAAGLRVRPRILCLQASQDNPTDYISMMNAIFSAQRQSIPIDAFALG
EHDLPFLQQAAHITRGAYVKPTHGAGLLQYLLSTAALDMRSRSHLKLPAARGVDFRASCF
CHKRPVSVGFVCSVCLSIFCERRSSCDTCGADFAADAQVTSVPSA
NT seq 858 nt   +upstreamnt  +downstreamnt
atggcggctcgcgaagacgacgtggcggacgataagtcacttttagttgtactcgtggag
acgaacccgcggtactgggcggcgagcgaggggaagggagacggcaccgcggcggcgaac
gggttgtcgagcgtgctcgaggccacgacggtgtttctgaatagtttctttgctttgaat
cagcaaaatagagcggcggtgatcgcggtgcacgacgatggatgccattatctgtatacg
tcgccgttggagttaaacgctggagacgcttcggcaagtgcgacgggtaagaagcgtacg
aagacggcgaccccatcgtcgcgcgcggcgatgtcgtcgcctttcgccggcgcgttgagt
ctggcgctgtgttactgcaaccgcgcgcaaacgctggaaaccgccgccggtttacgagtc
agaccgcgcattctgtgcttacaagcatctcaagacaatcccacggattacatctcgatg
atgaacgcgatattttcggcgcaacgacaatcaatacccatagacgcgttcgcgctcggc
gagcacgatttgccgtttctccaacaagccgcgcacatcactcgcggcgcctacgtaaag
cccacgcatggcgccggtttgcttcaatacctcctctccaccgccgccctggacatgcgc
agtcgctctcacctcaagctccccgccgcgcgcggcgtcgactttcgagcctcttgtttc
tgccacaagcgtccggtgagcgtcggcttcgtgtgctcggtgtgcctcagcatcttttgc
gaacgtcgatcgtcgtgcgatacctgcggcgccgacttcgccgccgacgcccaagtcacg
agcgttccatccgcgtag

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